ArchDB - Biological DataBase of Protein Loops

Information on 1gpu_A_87

Loop code: 1gpu_A_87
PDB: 1gpu
Chain: A
Type: HH alpha-alpha

Loop Start: 87 Loop Length: 29
Sec Struct Nt length: 4 Sec Struct Ct length: 20
Structure geometry

d (Å): 23.951000

delta (°): 45.301701

theta (°): 115.393898

rho (°): 58.483501

Sequence:	IEDLKQFRQLGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATY
Sec Struct:	HHHHTTTT-TT-S--SS--TTSTT--S---STTHHHHHHHHHHHHHHHHHHHH

PDB ligands within a cut-off distance of 6 Å in this loop

Ligands	Residue	atSS	atLOOP
THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE	H - 103	0	1
THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE	G - 116	0	1
THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE	P - 117	0	1
THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE	L - 118	0	1
THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE	G - 119	0	1

PDB Site Annotation

Site	Residue	atSS	atLOOP
AC2 - THD BINDING SITE FOR CHAIN A	H - 103	0	1
AC2 - THD BINDING SITE FOR CHAIN A	P - 117	0	1
AC2 - THD BINDING SITE FOR CHAIN A	L - 118	0	1