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Information on 1rkd_*_253
Loop code: 1rkd_*_253
PDB: 1rkd
Chain: *
Type: HH alpha-alpha		 Loop Start: 253  Loop Length: 4
Sec Struct Nt length: 14  Sec Struct Ct length: 16
Structure geometry
d (Å): 9.340400 delta (°): 100.595200theta (°): 142.714096 rho (°): 322.773285
Sequence:AGDTFNGALITALLEEKPLPEAIRFAHAAAAIAV
Sec Struct:HHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
PDB ligands within a cut-off distance of 6 Å in this loop
LigandsResidueatSSatLOOP
ADPADENOSINE-5'-DIPHOSPHATE A - 25310
ADPADENOSINE-5'-DIPHOSPHATE G - 25410
ADPADENOSINE-5'-DIPHOSPHATE D - 25510
RIBRIBOSE D - 25510
ADPADENOSINE-5'-DIPHOSPHATE F - 25710
ADPADENOSINE-5'-DIPHOSPHATE N - 25810
ADPADENOSINE-5'-DIPHOSPHATE A - 27810
ADPADENOSINE-5'-DIPHOSPHATE H - 27910
ADPADENOSINE-5'-DIPHOSPHATE A - 28010
ADPADENOSINE-5'-DIPHOSPHATE A - 28210
ADPADENOSINE-5'-DIPHOSPHATE A - 28310
ADPADENOSINE-5'-DIPHOSPHATE V - 28610
PDB Site Annotation
SiteResidueatSSatLOOP
AB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP.A - 25310
RB2RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE.G - 25410
RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.D - 25510
RB2RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE.D - 25510
AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP.A - 28010
AB2RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH ADP.A - 28010
AB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP.A - 28210
AB3RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP.V - 28610
Associated ArchDB40 Subclass to 1rkd_*_253

SUBCLASS: HH-3.3.1

Associated ArchDB95 Subclass to 1rkd_*_253

SUBCLASS: HH-3.2.1

Associated ArchDB-EC Subclass to 1rkd_*_253

SUBCLASS: HH-3.2.1