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Information on 1rkd_*_236
Loop code: 1rkd_*_236
PDB: 1rkd
Chain: *
Type: EH beta-alpha
Loop Start: 236  Loop Length: 12
Sec Struct Nt length: 5  Sec Struct Ct length: 14
Structure geometry
d (Å): 16.233000 delta (°): 57.928200theta (°): 109.752502 rho (°): 337.889893
Sequence:EGQRVPGFRVQAVDTIAAGDTFNGALITALL
Sec Struct:EEEEE-------S--TTHHHHHHHHHHHHHH
PDB ligands within a cut-off distance of 6 Å in this loop
LigandsResidueatSSatLOOP
ADPADENOSINE-5'-DIPHOSPHATE G - 24201
ADPADENOSINE-5'-DIPHOSPHATE F - 24301
ADPADENOSINE-5'-DIPHOSPHATE R - 24401
ADPADENOSINE-5'-DIPHOSPHATE V - 24501
ADPADENOSINE-5'-DIPHOSPHATE A - 24701
ADPADENOSINE-5'-DIPHOSPHATE T - 25001
RIBRIBOSE I - 25101
ADPADENOSINE-5'-DIPHOSPHATE A - 25201
RIBRIBOSE A - 25201
ADPADENOSINE-5'-DIPHOSPHATE A - 25301
ADPADENOSINE-5'-DIPHOSPHATE G - 25410
ADPADENOSINE-5'-DIPHOSPHATE D - 25510
RIBRIBOSE D - 25510
ADPADENOSINE-5'-DIPHOSPHATE F - 25710
ADPADENOSINE-5'-DIPHOSPHATE N - 25810
PDB Site Annotation
SiteResidueatSSatLOOP
AB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH ADP. F - 24301
AB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH ADP. V - 24501
AB3 - RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP. V - 24501
RB3 - RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. I - 25101
RB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. A - 25201
AB3 - RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP. A - 25301
RB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. G - 25410
RB1 - RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE. D - 25510
RB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. D - 25510