Information on 1rkd_*_236 |
Loop code: 1rkd_*_236 PDB: 1rkd Chain: * Type: EH beta-alpha |
Loop Start: 236 Loop Length: 12 Sec Struct Nt length: 5 Sec Struct Ct length: 14 Structure geometry
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Sequence: | EGQRVPGFRVQAVDTIAAGDTFNGALITALL |
Sec Struct: | EEEEE-------S--TTHHHHHHHHHHHHHH |
PDB ligands within a cut-off distance of 6 Å in this loop |
Ligands | Residue | atSS | atLOOP |
ADPADENOSINE-5'-DIPHOSPHATE | G - 242 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | F - 243 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | R - 244 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | V - 245 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | A - 247 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | T - 250 | 0 | 1 |
RIBRIBOSE | I - 251 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | A - 252 | 0 | 1 |
RIBRIBOSE | A - 252 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | A - 253 | 0 | 1 |
ADPADENOSINE-5'-DIPHOSPHATE | G - 254 | 1 | 0 |
ADPADENOSINE-5'-DIPHOSPHATE | D - 255 | 1 | 0 |
RIBRIBOSE | D - 255 | 1 | 0 |
ADPADENOSINE-5'-DIPHOSPHATE | F - 257 | 1 | 0 |
ADPADENOSINE-5'-DIPHOSPHATE | N - 258 | 1 | 0 |
PDB Site Annotation |
Site | Residue | atSS | atLOOP |
AB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH ADP. | F - 243 | 0 | 1 |
AB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH ADP. | V - 245 | 0 | 1 |
AB3 - RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP. | V - 245 | 0 | 1 |
RB3 - RESIDUES WITHIN VAN DER WAALS DISTANCE OF RIBOSE. | I - 251 | 0 | 1 |
RB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. | A - 252 | 0 | 1 |
AB3 - RESIDUES WITHIN VAN DER WAALS DISTANCE OF ADP. | A - 253 | 0 | 1 |
RB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. | G - 254 | 1 | 0 |
RB1 - RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE. | D - 255 | 1 | 0 |
RB2 - RESIDUES MAKING WATER-MEDIATED HYDROGEN BONDS WITH RIBOSE. | D - 255 | 1 | 0 |