PDB: 1a1v Compound: helicase Classification: COMPLEX (RNA HELICASE/DNA) Entry date in PDB: 1999-01-13 Resolution [Å]: 2.20 R-Factor: 0.228

CHAIN: A SWISS-PROT/TREMBL: P27958    KEYWORD: 3D-structure    ATP-binding    Coat protein    Core protein    Envelope protein    Glycoprotein    Helicase    Hydrolase    Nonstructural protein    Polyprotein    RNA-directed RNA polymerase    Serine protease    Transferase    Transmembrane    EC: 2.7.7.48 SCOP: c.37.1.14 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    RNA helicase    HCV helicase domain    Human hepatitis C virus (HCV), different isolates SCOP: c.37.1.14 Alpha and beta proteins (a/b)    P-loop containing nucleoside triphosphate hydrolases    P-loop containing nucleoside triphosphate hydrolases    RNA helicase    HCV helicase domain    Human hepatitis C virus (HCV), different isolates GO:  viral capsid    viral envelope    ATP binding    ATP-dependent helicase activity    helicase activity    nucleic acid binding    RNA binding    RNA-directed RNA polymerase activity    serine-type peptidase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral transformation

Image Source: PDB

Loops in ArchDB40 clusters

1a1v_A_213 - HE => SUBCLASS : 1.1.1
1a1v_A_371 - HE => SUBCLASS : 2.2.1
1a1v_A_371 - HE => SUBCLASS : 2.2.10
1a1v_A_213 - HE => SUBCLASS : 3.2.3
1a1v_A_232 - HE => SUBCLASS : 3.5.2
1a1v_A_347 - HA => SUBCLASS : 2.1.1
1a1v_A_251 - HA => SUBCLASS : 2.2.4
1a1v_A_352 - EH => SUBCLASS : 1.1.3
1a1v_A_352 - EH => SUBCLASS : 1.1.15
1a1v_A_352 - EH => SUBCLASS : 1.1.23
1a1v_A_225 - EH => SUBCLASS : 2.1.1
1a1v_A_363 - EH => SUBCLASS : 2.1.2
1a1v_A_609 - EH => SUBCLASS : 3.1.5
1a1v_A_609 - EH => SUBCLASS : 3.1.6
1a1v_A_445 - EH => SUBCLASS : 5.16.2
1a1v_A_445 - EH => SUBCLASS : 5.16.3
1a1v_A_258 - AR => SUBCLASS : 5.42.1
1a1v_A_544 - HH => SUBCLASS : 4.2.3

Loops in ArchDB95 clusters

1a1v_A_352 - EH => SUBCLASS : 1.1.7
1a1v_A_352 - EH => SUBCLASS : 1.1.21
1a1v_A_225 - EH => SUBCLASS : 2.1.1
1a1v_A_363 - EH => SUBCLASS : 2.1.3
1a1v_A_445 - EH => SUBCLASS : 3.1.13
1a1v_A_609 - EH => SUBCLASS : 3.2.8
1a1v_A_609 - EH => SUBCLASS : 3.2.11
1a1v_A_258 - AR => SUBCLASS : 5.41.1
1a1v_A_544 - HH => SUBCLASS : 4.10.2
1a1v_A_213 - HE => SUBCLASS : 1.2.3
1a1v_A_371 - HE => SUBCLASS : 2.1.1
1a1v_A_213 - HE => SUBCLASS : 3.5.2
1a1v_A_347 - HA => SUBCLASS : 2.1.1
1a1v_A_251 - HA => SUBCLASS : 2.2.4

Loops not clustered in ArchDB

1a1v_A_317 - AR
1a1v_A_336 - AR
1a1v_A_406 - AR
1a1v_A_424 - AR
1a1v_A_471 - EH
1a1v_A_286 - EH
1a1v_A_265 - EH
1a1v_A_198 - EH
1a1v_A_596 - HA
1a1v_A_433 - HA
1a1v_A_388 - HA
1a1v_A_558 - HE
1a1v_A_455 - HE
1a1v_A_357 - HE
1a1v_A_297 - HE
1a1v_A_270 - HE
1a1v_A_488 - HH
1a1v_A_506 - HH
1a1v_A_529 - HH

1a1q A - percentage of sequence identity: 86
1a1q B - percentage of sequence identity: 86
1a1q C - percentage of sequence identity: 86
1cu1 B - percentage of sequence identity: 94
1hei A - percentage of sequence identity: 99
1jr6 A - percentage of sequence identity: 85
1onb A - percentage of sequence identity: 85
2f55 A - percentage of sequence identity: 93
2f55 B - percentage of sequence identity: 93
2f55 C - percentage of sequence identity: 93
8ohm - - percentage of sequence identity: 93