PDB: 1b8p Compound: malate dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 1999-07-09 Resolution [Å]: 1.90 R-Factor: 0.175

CHAIN: A SWISS-PROT/TREMBL: Q9ZF99    KEYWORD: 3D-structure    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Aquaspirillum arcticum SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Aquaspirillum arcticum GO:  L-lactate dehydrogenase activity    malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1b8p_A_202 - HA => SUBCLASS : 2.1.1
1b8p_A_185 - HA => SUBCLASS : 7.17.1
1b8p_A_6 - EH => SUBCLASS : 4.14.1
1b8p_A_86 - EH => SUBCLASS : 11.4.1
1b8p_A_181 - AR => SUBCLASS : 1.2.1
1b8p_A_195 - AR => SUBCLASS : 4.2.6
1b8p_A_195 - AR => SUBCLASS : 5.2.1

Loops in ArchDB95 clusters

1b8p_A_68 - EH => SUBCLASS : 2.1.43
1b8p_A_37 - EH => SUBCLASS : 4.3.1
1b8p_A_6 - EH => SUBCLASS : 4.7.1
1b8p_A_293 - EH => SUBCLASS : 7.45.1
1b8p_A_86 - EH => SUBCLASS : 11.8.1
1b8p_A_181 - AR => SUBCLASS : 2.5.3
1b8p_A_195 - AR => SUBCLASS : 3.2.1
1b8p_A_47 - HE => SUBCLASS : 4.7.2
1b8p_A_77 - HE => SUBCLASS : 4.25.1
1b8p_A_101 - HE => SUBCLASS : 5.1.1
1b8p_A_160 - HE => SUBCLASS : 6.1.1
1b8p_A_136 - HE => SUBCLASS : 8.13.1
1b8p_A_16 - HE => SUBCLASS : 9.5.1
1b8p_A_202 - HA => SUBCLASS : 2.1.1
1b8p_A_185 - HA => SUBCLASS : 7.10.1

Loops in ArchDB-EC clusters

1b8p_A_208 - HH => SUBCLASS : 2.8.2

Loops not clustered in ArchDB

1b8p_A_195 - AR
1b8p_A_181 - AR
1b8p_A_128 - EH
1b8p_A_155 - EH
1b8p_A_206 - EH
1b8p_A_265 - HA
1b8p_A_202 - HA
1b8p_A_185 - HA
1b8p_A_282 - HA
1b8p_A_265 - HA
1b8p_A_282 - HA
1b8p_A_242 - HE
1b8p_A_229 - HH
1b8p_A_222 - HH
1b8p_A_215 - HH

1b8u A - percentage of sequence identity: 100
1b8v A - percentage of sequence identity: 100
1bdm B - percentage of sequence identity: 61
1bmd A - percentage of sequence identity: 61
1bmd B - percentage of sequence identity: 61
1iz9 B - percentage of sequence identity: 61
1y7t A - percentage of sequence identity: 61
1y7t B - percentage of sequence identity: 61
2cvq A - percentage of sequence identity: 61
2cvq B - percentage of sequence identity: 61