PDB: 1b9m Compound: mode Classification: TRANSCRIPTION Entry date in PDB: 2000-03-15 Resolution [Å]: 1.75 R-Factor: 0.234

CHAIN: A SWISS-PROT/TREMBL: P46930    KEYWORD: 3D-structure    Activator    Complete proteome    DNA-binding    Molybdenum    Repeat    Repressor    Transcription regulation    Transport    SCOP: a.4.5.8 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    N-terminal domain of molybdate-dependent transcriptional regulator ModE    N-terminal domain of molybdate-dependent transcriptional regulator ModE    Escherichia coli SCOP: b.40.6.2 All beta proteins    OB-fold    MOP-like    BiMOP, duplicated molybdate-binding domain    C-terminal domain of molybdate-dependent transcriptional regulator ModE    Escherichia coli SCOP: b.40.6.2 All beta proteins    OB-fold    MOP-like    BiMOP, duplicated molybdate-binding domain    C-terminal domain of molybdate-dependent transcriptional regulator ModE    Escherichia coli GO:  molybdate ion transporter activity    molybdate ion transporter activity    molybdate ion transporter activity    molybdenum ion binding    molybdenum ion binding    molybdenum ion binding    transcription factor activity    transcription factor activity    transcription factor activity    molybdate ion transport    molybdate ion transport    molybdate ion transport    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: P46930    KEYWORD: 3D-structure    Activator    Complete proteome    DNA-binding    Molybdenum    Repeat    Repressor    Transcription regulation    Transport    SCOP: a.4.5.8 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    N-terminal domain of molybdate-dependent transcriptional regulator ModE    N-terminal domain of molybdate-dependent transcriptional regulator ModE    Escherichia coli SCOP: b.40.6.2 All beta proteins    OB-fold    MOP-like    BiMOP, duplicated molybdate-binding domain    C-terminal domain of molybdate-dependent transcriptional regulator ModE    Escherichia coli SCOP: b.40.6.2 All beta proteins    OB-fold    MOP-like    BiMOP, duplicated molybdate-binding domain    C-terminal domain of molybdate-dependent transcriptional regulator ModE    Escherichia coli GO:  molybdate ion transporter activity    molybdate ion transporter activity    molybdate ion transporter activity    molybdenum ion binding    molybdenum ion binding    molybdenum ion binding    transcription factor activity    transcription factor activity    transcription factor activity    molybdate ion transport    molybdate ion transport    molybdate ion transport    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB40 clusters

1b9m_A_193 - HE => SUBCLASS : 2.3.1
1b9m_A_164 - HE => SUBCLASS : 6.6.1
1b9m_A_9 - HA => SUBCLASS : 2.1.1
1b9m_A_210 - HA => SUBCLASS : 2.2.3
1b9m_A_146 - HA => SUBCLASS : 4.9.1
1b9m_A_146 - HA => SUBCLASS : 5.21.1
1b9m_A_14 - EH => SUBCLASS : 0.1.34
1b9m_A_76 - EH => SUBCLASS : 1.1.9
1b9m_A_188 - EH => SUBCLASS : 2.1.1
1b9m_A_157 - EH => SUBCLASS : 3.5.5
1b9m_A_201 - AR => SUBCLASS : 2.1.1
1b9m_A_246 - AR => SUBCLASS : 4.2.2
1b9m_A_177 - AR => SUBCLASS : 4.2.2
1b9m_A_34 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1b9m_A_76 - EH => SUBCLASS : 1.1.7
1b9m_A_157 - EH => SUBCLASS : 1.1.9
1b9m_A_188 - EH => SUBCLASS : 2.1.2
1b9m_A_201 - AR => SUBCLASS : 1.2.8
1b9m_A_246 - AR => SUBCLASS : 3.2.1
1b9m_A_177 - AR => SUBCLASS : 3.2.1
1b9m_A_246 - AR => SUBCLASS : 5.27.1
1b9m_A_34 - HH => SUBCLASS : 3.1.1
1b9m_A_193 - HE => SUBCLASS : 2.2.1
1b9m_A_193 - HE => SUBCLASS : 2.2.3
1b9m_A_164 - HE => SUBCLASS : 6.4.1
1b9m_A_9 - HA => SUBCLASS : 2.1.1
1b9m_A_210 - HA => SUBCLASS : 2.2.3
1b9m_A_146 - HA => SUBCLASS : 4.8.1

Loops not clustered in ArchDB

1b9m_A_231 - EH
1b9m_A_64 - HA
1b9m_A_129 - HA
1b9m_A_216 - HA
1b9m_A_45 - HE
1b9m_A_114 - HE
1b9m_A_235 - HE
1b9m_A_19 - HH
1b9m_A_80 - HH

1b9m A - percentage of sequence identity: 100
1b9m B - percentage of sequence identity: 100
1b9n A - percentage of sequence identity: 100
1b9n B - percentage of sequence identity: 100
1h9r A - percentage of sequence identity: 99
1h9r B - percentage of sequence identity: 99
1h9s A - percentage of sequence identity: 99
1h9s B - percentage of sequence identity: 98
1o7l A - percentage of sequence identity: 100
1o7l B - percentage of sequence identity: 100
1o7l C - percentage of sequence identity: 100
1o7l D - percentage of sequence identity: 100