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Information on 1bdq
PDB: 1bdq
Compound: hiv-1 protease
Classification: HYDROLASE
Entry date in PDB: 1998-08-12
Resolution [Å]: 2.50
R-Factor: 0.191


CHAIN: A
SWISS-PROT/TREMBL: P04587
   KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger   
EC: 2.7.7.49
SCOP: b.50.1.1 All beta proteins    Acid proteases    Acid proteases    Retroviral protease (retropepsin)    Human immunodeficiency virus type 1 protease    Human immunodeficiency virus type 1
GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication   


CHAIN: B
SWISS-PROT/TREMBL: P04587
   KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger   
EC: 2.7.7.49
SCOP: b.50.1.1 All beta proteins    Acid proteases    Acid proteases    Retroviral protease (retropepsin)    Human immunodeficiency virus type 1 protease    Human immunodeficiency virus type 1
GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication   
1bdq Image
Image Source: PDB

Stored Loops of 1bdq

Loops in ArchDB95 clusters

1bdq_A_18 - AR => SUBCLASS : 4.7.1
1bdq_A_18 - AR => SUBCLASS : 5.2.1
1bdq_A_69 - AR => SUBCLASS : 5.12.1

Loops not clustered in ArchDB

1bdq_A_31 - AR
1bdq_A_83 - EH
1bdq_A_10 - HA
1bdq_A_43 - HA
1bdq_A_53 - HA

Homologous structures to 1bdq classified in ArchDB

1a30 A - percentage of sequence identity: 88
1a30 B - percentage of sequence identity: 88
1a8g A - percentage of sequence identity: 90
1a8g B - percentage of sequence identity: 90
1a8k A - percentage of sequence identity: 88
1a8k B - percentage of sequence identity: 88
1a8k D - percentage of sequence identity: 88
1a8k E - percentage of sequence identity: 88
1a94 A - percentage of sequence identity: 85
1a94 B - percentage of sequence identity: 85
1a94 D - percentage of sequence identity: 85
1a94 E - percentage of sequence identity: 85
1a9m A - percentage of sequence identity: 89
1a9m B - percentage of sequence identity: 89
1aaq A - percentage of sequence identity: 89
1aaq B - percentage of sequence identity: 89
1aid A - percentage of sequence identity: 86
1aid B - percentage of sequence identity: 86
1ajv A - percentage of sequence identity: 90
1ajv B - percentage of sequence identity: 90
1ajx A - percentage of sequence identity: 90
1ajx B - percentage of sequence identity: 90
1axa A - percentage of sequence identity: 89
1axa B - percentage of sequence identity: 89
1b6j A - percentage of sequence identity: 84
1b6j B - percentage of sequence identity: 84
1b6k A - percentage of sequence identity: 83
1b6k B - percentage of sequence identity: 83
1b6l A - percentage of sequence identity: 83
1b6l B - percentage of sequence identity: 83
1b6m A - percentage of sequence identity: 83
1b6m B - percentage of sequence identity: 83
1b6p A - percentage of sequence identity: 83
1b6p B - percentage of sequence identity: 83
1bdl A - percentage of sequence identity: 97
1bdl B - percentage of sequence identity: 97
1bdq A - percentage of sequence identity: 100
1bdq B - percentage of sequence identity: 100
1bdr A - percentage of sequence identity: 96
1bdr B - percentage of sequence identity: 96
1bv7 A - percentage of sequence identity: 89
1bv7 B - percentage of sequence identity: 89
1bv9 A - percentage of sequence identity: 88
1bv9 B - percentage of sequence identity: 88
1bve A - percentage of sequence identity: 88
1bve B - percentage of sequence identity: 88
1bvg A - percentage of sequence identity: 88
1bvg B - percentage of sequence identity: 88
1bwa A - percentage of sequence identity: 88
1bwa B - percentage of sequence identity: 88
1bwb A - percentage of sequence identity: 88
1bwb B - percentage of sequence identity: 88
1c6x A - percentage of sequence identity: 83
1c6x B - percentage of sequence identity: 83
1c6y A - percentage of sequence identity: 83
1c6y B - percentage of sequence identity: 83
1c6z A - percentage of sequence identity: 83
1c6z B - percentage of sequence identity: 83
1c70 A - percentage of sequence identity: 90
1c70 B - percentage of sequence identity: 90
1cpi A - percentage of sequence identity: 84
1cpi B - percentage of sequence identity: 84
1d4h A - percentage of sequence identity: 90
1d4h B - percentage of sequence identity: 90
1d4i A - percentage of sequence identity: 90
1d4i B - percentage of sequence identity: 90
1d4j A - percentage of sequence identity: 90
1d4j B - percentage of sequence identity: 90
1d4k A - percentage of sequence identity: 83
1d4k B - percentage of sequence identity: 83
1d4l A - percentage of sequence identity: 83
1d4l B - percentage of sequence identity: 83
1d4s A - percentage of sequence identity: 89
1d4s B - percentage of sequence identity: 89
1d4y A - percentage of sequence identity: 88
1d4y B - percentage of sequence identity: 88
1daz C - percentage of sequence identity: 85
1daz D - percentage of sequence identity: 85
1dif A - percentage of sequence identity: 90
1dif B - percentage of sequence identity: 90
1dmp A - percentage of sequence identity: 88
1dmp B - percentage of sequence identity: 88
1dw6 C - percentage of sequence identity: 85
1dw6 D - percentage of sequence identity: 85
1ebk C - percentage of sequence identity: 85
1ebk D - percentage of sequence identity: 85
1ebk E - percentage of sequence identity: 85
1ebk F - percentage of sequence identity: 85
1ebw A - percentage of sequence identity: 90
1ebw B - percentage of sequence identity: 90
1eby A - percentage of sequence identity: 90
1eby B - percentage of sequence identity: 90
1ebz A - percentage of sequence identity: 90
1ebz B - percentage of sequence identity: 90
1ec0 A - percentage of sequence identity: 90
1ec0 B - percentage of sequence identity: 90
1ec1 A - percentage of sequence identity: 90
1ec1 B - percentage of sequence identity: 90
1ec2 A - percentage of sequence identity: 90
1ec2 B - percentage of sequence identity: 90
1ec3 A - percentage of sequence identity: 90
1ec3 B - percentage of sequence identity: 90
1f7a A - percentage of sequence identity: 84
1f7a B - percentage of sequence identity: 84
1fb7 A - percentage of sequence identity: 87
1fej C - percentage of sequence identity: 85
1fej D - percentage of sequence identity: 85
1ff0 C - percentage of sequence identity: 85
1ff0 D - percentage of sequence identity: 85
1fff C - percentage of sequence identity: 85
1fff D - percentage of sequence identity: 85
1ffi C - percentage of sequence identity: 85
1ffi D - percentage of sequence identity: 85
1fg6 C - percentage of sequence identity: 85
1fg6 D - percentage of sequence identity: 85
1fg8 C - percentage of sequence identity: 85
1fg8 D - percentage of sequence identity: 85
1fgc C - percentage of sequence identity: 86
1fgc D - percentage of sequence identity: 86
1fqx A - percentage of sequence identity: 90
1fqx B - percentage of sequence identity: 90
1g2k A - percentage of sequence identity: 90
1g2k B - percentage of sequence identity: 90
1g35 A - percentage of sequence identity: 90
1g35 B - percentage of sequence identity: 90
1g6l A - percentage of sequence identity: 88
1gnm A - percentage of sequence identity: 90
1gnm B - percentage of sequence identity: 90
1gnn A - percentage of sequence identity: 90
1gnn B - percentage of sequence identity: 90
1gno A - percentage of sequence identity: 90
1gno B - percentage of sequence identity: 90
1hbv A - percentage of sequence identity: 90
1hbv B - percentage of sequence identity: 90
1hef E - percentage of sequence identity: 90
1heg E - percentage of sequence identity: 90
1hhp - - percentage of sequence identity: 90
1hih A - percentage of sequence identity: 90
1hih B - percentage of sequence identity: 90
1hiv A - percentage of sequence identity: 89
1hiv B - percentage of sequence identity: 89
1hos A - percentage of sequence identity: 90
1hos B - percentage of sequence identity: 90
1hpo A - percentage of sequence identity: 88
1hpo B - percentage of sequence identity: 88
1hps A - percentage of sequence identity: 90
1hps B - percentage of sequence identity: 90
1hpv A - percentage of sequence identity: 90
1hpv B - percentage of sequence identity: 90
1hpx A - percentage of sequence identity: 90
1hpx B - percentage of sequence identity: 90
1hsg A - percentage of sequence identity: 90
1hsg B - percentage of sequence identity: 90
1hte A - percentage of sequence identity: 90
1hte B - percentage of sequence identity: 90
1htf A - percentage of sequence identity: 90
1htf B - percentage of sequence identity: 90
1htg A - percentage of sequence identity: 90
1htg B - percentage of sequence identity: 90
1hvc - - percentage of sequence identity: 88
1hvh A - percentage of sequence identity: 88
1hvh B - percentage of sequence identity: 88
1hvi A - percentage of sequence identity: 90
1hvi B - percentage of sequence identity: 90
1hvj A - percentage of sequence identity: 90
1hvj B - percentage of sequence identity: 90
1hvk A - percentage of sequence identity: 90
1hvk B - percentage of sequence identity: 90
1hvl A - percentage of sequence identity: 90
1hvl B - percentage of sequence identity: 90
1hvr A - percentage of sequence identity: 88
1hvr B - percentage of sequence identity: 88
1hvs A - percentage of sequence identity: 90
1hvs B - percentage of sequence identity: 90
1hwr A - percentage of sequence identity: 88
1hwr B - percentage of sequence identity: 88
1hxb A - percentage of sequence identity: 89
1hxb B - percentage of sequence identity: 89
1hxw A - percentage of sequence identity: 90
1hxw B - percentage of sequence identity: 90
1iiq A - percentage of sequence identity: 90
1iiq B - percentage of sequence identity: 90
1izh A - percentage of sequence identity: 90
1izh B - percentage of sequence identity: 90
1izi A - percentage of sequence identity: 88
1izi B - percentage of sequence identity: 88
1k1t A - percentage of sequence identity: 85
1k1t B - percentage of sequence identity: 85
1k1u A - percentage of sequence identity: 84
1k1u B - percentage of sequence identity: 84
1k2b A - percentage of sequence identity: 84
1k2b B - percentage of sequence identity: 84
1k2c A - percentage of sequence identity: 85
1k2c B - percentage of sequence identity: 85
1k6c A - percentage of sequence identity: 86
1k6c B - percentage of sequence identity: 86
1k6p A - percentage of sequence identity: 86
1k6p B - percentage of sequence identity: 86
1k6t A - percentage of sequence identity: 86
1k6t B - percentage of sequence identity: 86
1k6v A - percentage of sequence identity: 86
1k6v B - percentage of sequence identity: 86
1kj4 A - percentage of sequence identity: 84
1kj4 B - percentage of sequence identity: 84
1kj4 C - percentage of sequence identity: 84
1kj4 D - percentage of sequence identity: 84
1kj7 A - percentage of sequence identity: 84
1kj7 B - percentage of sequence identity: 84
1kjf A - percentage of sequence identity: 84
1kjf B - percentage of sequence identity: 84
1kjg A - percentage of sequence identity: 84
1kjg B - percentage of sequence identity: 84
1kjh A - percentage of sequence identity: 84
1kjh B - percentage of sequence identity: 84
1kzk A - percentage of sequence identity: 85
1kzk B - percentage of sequence identity: 85
1lv1 A - percentage of sequence identity: 88
1lzq A - percentage of sequence identity: 88
1lzq B - percentage of sequence identity: 88
1m0b A - percentage of sequence identity: 90
1m0b B - percentage of sequence identity: 90
1mer A - percentage of sequence identity: 88
1mer B - percentage of sequence identity: 88
1mes A - percentage of sequence identity: 88
1mes B - percentage of sequence identity: 88
1met A - percentage of sequence identity: 89
1met B - percentage of sequence identity: 89
1meu A - percentage of sequence identity: 88
1meu B - percentage of sequence identity: 88
1mrw A - percentage of sequence identity: 88
1mrw B - percentage of sequence identity: 88
1mrx A - percentage of sequence identity: 87
1mrx B - percentage of sequence identity: 87
1msm A - percentage of sequence identity: 88
1msm B - percentage of sequence identity: 88
1msn A - percentage of sequence identity: 87
1msn B - percentage of sequence identity: 87
1mt7 A - percentage of sequence identity: 84
1mt7 B - percentage of sequence identity: 84
1mt8 A - percentage of sequence identity: 84
1mt8 B - percentage of sequence identity: 84
1mt9 A - percentage of sequence identity: 84
1mt9 B - percentage of sequence identity: 84
1mtb A - percentage of sequence identity: 85
1mtb B - percentage of sequence identity: 85
1mtr A - percentage of sequence identity: 83
1mtr B - percentage of sequence identity: 83
1mui A - percentage of sequence identity: 90
1mui B - percentage of sequence identity: 90
1n49 A - percentage of sequence identity: 84
1n49 B - percentage of sequence identity: 84
1n49 C - percentage of sequence identity: 84
1n49 D - percentage of sequence identity: 84
1nh0 A - percentage of sequence identity: 90
1nh0 B - percentage of sequence identity: 90
1npa A - percentage of sequence identity: 90
1npa B - percentage of sequence identity: 90
1npv A - percentage of sequence identity: 90
1npv B - percentage of sequence identity: 90
1npw A - percentage of sequence identity: 90
1npw B - percentage of sequence identity: 90
1odw A - percentage of sequence identity: 89
1odw B - percentage of sequence identity: 89
1odx A - percentage of sequence identity: 89
1odx B - percentage of sequence identity: 89
1ody A - percentage of sequence identity: 88
1ody B - percentage of sequence identity: 87
1ohr A - percentage of sequence identity: 90
1ohr B - percentage of sequence identity: 90
1pro A - percentage of sequence identity: 90
1pro B - percentage of sequence identity: 90
1q9p A - percentage of sequence identity: 87
1qbr A - percentage of sequence identity: 88
1qbr B - percentage of sequence identity: 88
1qbs A - percentage of sequence identity: 88
1qbs B - percentage of sequence identity: 88
1qbt A - percentage of sequence identity: 88
1qbt B - percentage of sequence identity: 88
1qbu A - percentage of sequence identity: 88
1qbu B - percentage of sequence identity: 88
1rl8 A - percentage of sequence identity: 89
1rl8 B - percentage of sequence identity: 89
1rpi A - percentage of sequence identity: 81
1rpi B - percentage of sequence identity: 81
1rq9 A - percentage of sequence identity: 81
1rq9 B - percentage of sequence identity: 81
1rv7 A - percentage of sequence identity: 81
1rv7 B - percentage of sequence identity: 81
1s65 A - percentage of sequence identity: 86
1s65 B - percentage of sequence identity: 86
1s6g A - percentage of sequence identity: 86
1s6g B - percentage of sequence identity: 86
1s6s A - percentage of sequence identity: 85
1s6s B - percentage of sequence identity: 85
1sbg A - percentage of sequence identity: 90
1sbg B - percentage of sequence identity: 90
1sdt A - percentage of sequence identity: 86
1sdt B - percentage of sequence identity: 86
1sdu A - percentage of sequence identity: 85
1sdu B - percentage of sequence identity: 85
1sdv A - percentage of sequence identity: 86
1sdv B - percentage of sequence identity: 86
1sgu A - percentage of sequence identity: 86
1sgu B - percentage of sequence identity: 86
1sh9 A - percentage of sequence identity: 86
1sh9 B - percentage of sequence identity: 86
1sp5 A - percentage of sequence identity: 90
1sp5 B - percentage of sequence identity: 90
1t3r A - percentage of sequence identity: 85
1t3r B - percentage of sequence identity: 85
1t7i A - percentage of sequence identity: 86
1t7i B - percentage of sequence identity: 86
1t7j A - percentage of sequence identity: 86
1t7j B - percentage of sequence identity: 86
1t7k A - percentage of sequence identity: 90
1t7k B - percentage of sequence identity: 90
1tcx A - percentage of sequence identity: 93
1tcx B - percentage of sequence identity: 93
1tsq A - percentage of sequence identity: 84
1tsq B - percentage of sequence identity: 84
1tsu A - percentage of sequence identity: 84
1tsu B - percentage of sequence identity: 84
1tw7 A - percentage of sequence identity: 81
1tw7 B - percentage of sequence identity: 81
1u8g A - percentage of sequence identity: 90
1u8g B - percentage of sequence identity: 90
1upj - - percentage of sequence identity: 90
1vij A - percentage of sequence identity: 90
1vij B - percentage of sequence identity: 90
1vik A - percentage of sequence identity: 90
1vik B - percentage of sequence identity: 90
1w5v A - percentage of sequence identity: 90
1w5v B - percentage of sequence identity: 90
1w5w A - percentage of sequence identity: 90
1w5w B - percentage of sequence identity: 90
1w5x A - percentage of sequence identity: 90
1w5x B - percentage of sequence identity: 90
1w5y A - percentage of sequence identity: 90
1w5y B - percentage of sequence identity: 90
1wbk A - percentage of sequence identity: 90
1wbk B - percentage of sequence identity: 90
1wbm A - percentage of sequence identity: 90
1wbm B - percentage of sequence identity: 90
1xl2 A - percentage of sequence identity: 90
1xl2 B - percentage of sequence identity: 90
1xl5 A - percentage of sequence identity: 90
1xl5 B - percentage of sequence identity: 90
1yt9 A - percentage of sequence identity: 90
1yt9 B - percentage of sequence identity: 90
1ytg A - percentage of sequence identity: 85
1ytg B - percentage of sequence identity: 85
1yth A - percentage of sequence identity: 85
1yth B - percentage of sequence identity: 85
1z1h A - percentage of sequence identity: 83
1z1h B - percentage of sequence identity: 83
1z1r A - percentage of sequence identity: 83
1z1r B - percentage of sequence identity: 83
1zp8 A - percentage of sequence identity: 89
1zpa A - percentage of sequence identity: 89
1ztz A - percentage of sequence identity: 88
1ztz B - percentage of sequence identity: 88
2a1e A - percentage of sequence identity: 86
2a1e B - percentage of sequence identity: 86
2a4f A - percentage of sequence identity: 90
2a4f B - percentage of sequence identity: 90
2aid A - percentage of sequence identity: 85
2aid B - percentage of sequence identity: 85
2aoc A - percentage of sequence identity: 85
2aoc B - percentage of sequence identity: 85
2aod A - percentage of sequence identity: 86
2aod B - percentage of sequence identity: 86
2aoe A - percentage of sequence identity: 86
2aoe B - percentage of sequence identity: 86
2aof A - percentage of sequence identity: 86
2aof B - percentage of sequence identity: 86
2aog A - percentage of sequence identity: 86
2aog B - percentage of sequence identity: 86
2aoh A - percentage of sequence identity: 86
2aoh B - percentage of sequence identity: 86
2aoi A - percentage of sequence identity: 86
2aoi B - percentage of sequence identity: 86
2aoj A - percentage of sequence identity: 86
2aoj B - percentage of sequence identity: 86
2avm A - percentage of sequence identity: 85
2avm B - percentage of sequence identity: 85
2avo A - percentage of sequence identity: 85
2avo B - percentage of sequence identity: 85
2avq A - percentage of sequence identity: 85
2avq B - percentage of sequence identity: 85
2avs A - percentage of sequence identity: 85
2avs B - percentage of sequence identity: 85
2avv A - percentage of sequence identity: 85
2avv B - percentage of sequence identity: 85
2avv D - percentage of sequence identity: 85
2avv E - percentage of sequence identity: 85
2bb9 A - percentage of sequence identity: 90
2bb9 B - percentage of sequence identity: 90
2bbb A - percentage of sequence identity: 90
2bbb B - percentage of sequence identity: 90
2bpv A - percentage of sequence identity: 90
2bpv B - percentage of sequence identity: 90
2bpw A - percentage of sequence identity: 90
2bpw B - percentage of sequence identity: 90
2bpx A - percentage of sequence identity: 90
2bpx B - percentage of sequence identity: 90
2bpy A - percentage of sequence identity: 90
2bpy B - percentage of sequence identity: 90
2bpz A - percentage of sequence identity: 90
2bpz B - percentage of sequence identity: 90
2bqv A - percentage of sequence identity: 90
2bqv B - percentage of sequence identity: 90
2fdd A - percentage of sequence identity: 81
2fdd B - percentage of sequence identity: 81
2fde A - percentage of sequence identity: 90
2fde B - percentage of sequence identity: 90
2hvp - - percentage of sequence identity: 90
2upj A - percentage of sequence identity: 90
2upj B - percentage of sequence identity: 90
3aid A - percentage of sequence identity: 85
3aid B - percentage of sequence identity: 85
3hvp - - percentage of sequence identity: 84
3phv - - percentage of sequence identity: 90
3tlh A - percentage of sequence identity: 89
4hvp A - percentage of sequence identity: 84
4hvp B - percentage of sequence identity: 84
4phv A - percentage of sequence identity: 90
4phv B - percentage of sequence identity: 90
5hvp A - percentage of sequence identity: 90
5hvp B - percentage of sequence identity: 90
7hvp A - percentage of sequence identity: 84
7hvp B - percentage of sequence identity: 84
7upj A - percentage of sequence identity: 90
7upj B - percentage of sequence identity: 90
8hvp A - percentage of sequence identity: 84
8hvp B - percentage of sequence identity: 84
9hvp A - percentage of sequence identity: 90
9hvp B - percentage of sequence identity: 90