PDB: 1bnd Compound: brain derived neurotrophic factor Classification: COMPLEX (GROWTH FACTOR/GROWTH FACTOR) Entry date in PDB: 1996-04-04 Resolution [Å]: 2.30 R-Factor: 0.182

CHAIN: A SWISS-PROT/TREMBL: P23560    KEYWORD: 3D-structure    Disease mutation    Glycoprotein    Growth factor    Polymorphism    Signal    SCOP: g.17.1.3 Small proteins    Cystine-knot cytokines    Cystine-knot cytokines    Neurotrophin    Brain-derived neurotrophic factor, BDNF    Human (Homo sapiens) GO:  growth factor activity    CHAIN: B SWISS-PROT/TREMBL: P20783    KEYWORD: 3D-structure    Growth factor    Polymorphism    Signal    SCOP: g.17.1.3 Small proteins    Cystine-knot cytokines    Cystine-knot cytokines    Neurotrophin    Neurotrophin 3, NT3    Human (Homo sapiens) GO:  growth factor activity

Image Source: PDB

Loops in ArchDB40 clusters

1bnd_A_27 - HA => SUBCLASS : 3.1.1
1bnd_A_35 - AR => SUBCLASS : 2.1.3

Loops in ArchDB95 clusters

1bnd_A_35 - AR => SUBCLASS : 2.1.1
1bnd_B_16 - AR => SUBCLASS : 4.7.3
1bnd_A_27 - HA => SUBCLASS : 3.1.1
1bnd_B_26 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1bnd_B_52 - AR
1bnd_A_52 - AR
1bnd_B_48 - AR
1bnd_B_34 - AR
1bnd_A_15 - EH
1bnd_A_41 - HA
1bnd_B_40 - HA
1bnd_B_76 - HA
1bnd_A_76 - HA
1bnd_A_48 - HA
1bnd_A_22 - HE

1b8m A - percentage of sequence identity: 99
1www V - percentage of sequence identity: 60