PDB: 1cdw Compound: tata-box-binding protein Classification: COMPLEX (TRANSCRIPTION FACTOR/DNA) Entry date in PDB: 1996-12-23 Resolution [Å]: 1.90 R-Factor: 0.189

CHAIN: A SWISS-PROT/TREMBL: P20226    KEYWORD: 3D-structure    Disease mutation    DNA-binding    Nuclear protein    Polymorphism    Repeat    Transcription    Triplet repeat expansion    SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Human (Homo sapiens) SCOP: d.129.1.1 Alpha and beta proteins (a+b)    TBP-like    TATA-box binding protein-like    TATA-box binding protein (TBP), C-terminal domain    TATA-box binding protein (TBP), C-terminal domain    Human (Homo sapiens) GO:  nucleus    transcription factor TFIID complex    binding    DNA binding    RNA polymerase II transcription factor activity    regulation of transcription, DNA-dependent    transcription initiation from RNA polymerase II promoter

Image Source: PDB

Loops in ArchDB95 clusters

1cdw_A_160 - EH => SUBCLASS : 6.26.1
1cdw_A_266 - HE => SUBCLASS : 0.1.20
1cdw_A_176 - HE => SUBCLASS : 3.10.3
1cdw_A_204 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1cdw_A_214 - EH
1cdw_A_247 - EH
1cdw_A_305 - EH
1cdw_A_186 - HA
1cdw_A_195 - HA
1cdw_A_277 - HA
1cdw_A_287 - HA
1cdw_A_296 - HA
1cdw_A_223 - HE

1c9b B - percentage of sequence identity: 99
1c9b F - percentage of sequence identity: 99
1c9b J - percentage of sequence identity: 99
1c9b N - percentage of sequence identity: 99
1c9b R - percentage of sequence identity: 99
1jfi C - percentage of sequence identity: 99
1ngm A - percentage of sequence identity: 81
1ngm E - percentage of sequence identity: 81
1ngm I - percentage of sequence identity: 81
1ngm M - percentage of sequence identity: 81
1nvp A - percentage of sequence identity: 99
1qn3 A - percentage of sequence identity: 83
1qn3 B - percentage of sequence identity: 83
1qn4 A - percentage of sequence identity: 83
1qn4 B - percentage of sequence identity: 83
1qn5 A - percentage of sequence identity: 83
1qn5 B - percentage of sequence identity: 83
1qn6 A - percentage of sequence identity: 83
1qn6 B - percentage of sequence identity: 83
1qn7 A - percentage of sequence identity: 83
1qn7 B - percentage of sequence identity: 83
1qn8 A - percentage of sequence identity: 83
1qn8 B - percentage of sequence identity: 83
1qn9 A - percentage of sequence identity: 83
1qn9 B - percentage of sequence identity: 83
1qna B - percentage of sequence identity: 83
1qnb A - percentage of sequence identity: 83
1qnb B - percentage of sequence identity: 83
1qnc A - percentage of sequence identity: 83
1qnc B - percentage of sequence identity: 83
1qne A - percentage of sequence identity: 83
1qne B - percentage of sequence identity: 83
1rm1 A - percentage of sequence identity: 81
1tba B - percentage of sequence identity: 81
1tbp A - percentage of sequence identity: 80
1tbp B - percentage of sequence identity: 80
1tgh A - percentage of sequence identity: 99
1vok A - percentage of sequence identity: 83
1vok B - percentage of sequence identity: 83
1vol B - percentage of sequence identity: 83
1ytb A - percentage of sequence identity: 81
1ytb B - percentage of sequence identity: 81
1ytf A - percentage of sequence identity: 81