PDB: 1cmx Compound: ubiquitin yuh1-ubal Classification: HYDROLASE Entry date in PDB: 1999-07-27 Resolution [Å]: 2.25 R-Factor: 0.248

CHAIN: A SWISS-PROT/TREMBL: P35127    KEYWORD: 3D-structure    Hydrolase    Thiol protease    Ubl conjugation pathway    EC: 3.4.19.12 SCOP: d.3.1.6 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Ubiquitin carboxyl-terminal hydrolase UCH-l3    Ubiquitin carboxyl-terminal hydrolase UCH-l3    Synthetic, based on Saccharomyces cerevisiae sequence GO:  intracellular    ubiquitin thiolesterase activity    ubiquitin-dependent protein catabolism    CHAIN: C SWISS-PROT/TREMBL: P35127    KEYWORD: 3D-structure    Hydrolase    Thiol protease    Ubl conjugation pathway    EC: 3.4.19.12 SCOP: d.3.1.6 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Ubiquitin carboxyl-terminal hydrolase UCH-l3    Ubiquitin carboxyl-terminal hydrolase UCH-l3    Synthetic, based on Saccharomyces cerevisiae sequence GO:  intracellular    ubiquitin thiolesterase activity    ubiquitin-dependent protein catabolism

Image Source: PDB

Loops in ArchDB40 clusters

1cmx_A_15 - HE => SUBCLASS : 6.7.1
1cmx_A_128 - EH => SUBCLASS : 2.4.2

Loops in ArchDB95 clusters

1cmx_A_128 - EH => SUBCLASS : 2.3.3
1cmx_A_15 - HE => SUBCLASS : 6.5.1

Loops in ArchDB-EC clusters

1cmx_A_15 - HE => SUBCLASS : 6.18.1

Loops not clustered in ArchDB

1cmx_A_31 - AR
1cmx_A_54 - AR
1cmx_A_31 - AR
1cmx_A_54 - AR
1cmx_A_81 - EH
1cmx_A_189 - EH
1cmx_A_176 - HA
1cmx_A_165 - HA
1cmx_A_176 - HA
1cmx_A_165 - HA
1cmx_A_146 - HE
1cmx_A_111 - HE
1cmx_A_205 - HE
1cmx_A_132 - HH
1cmx_A_90 - HH

1bt0 A - percentage of sequence identity: 63
1cmx A - percentage of sequence identity: 100
1cmx C - percentage of sequence identity: 100
1ogw A - percentage of sequence identity: 97