PDB: 1cyx Compound: cyoa Classification: ELECTRON TRANSPORT Entry date in PDB: 1996-03-08 Resolution [Å]: 2.30 R-Factor: 0.196

CHAIN: - SWISS-PROT/TREMBL: P18400    KEYWORD: 3D-structure    Complete proteome    Electron transport    Inner membrane    Lipoprotein    Oxidoreductase    Palmitate    Respiratory chain    Signal    Transmembrane    EC: 1.10.3.- SCOP: b.6.1.2 All beta proteins    Cupredoxin-like    Cupredoxins    Periplasmic domain of cytochrome c oxidase subunit II    Quinol oxidase (CyoA)    Escherichia coli GO:  inner membrane    inner membrane    integral to membrane    integral to membrane    membrane    membrane    copper ion binding    copper ion binding    cytochrome o ubiquinol oxidase activity    cytochrome o ubiquinol oxidase activity    cytochrome-c oxidase activity    cytochrome-c oxidase activity    oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor    oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor    electron transport    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1cyx_*_127 - HA => SUBCLASS : 2.6.1
1cyx_*_137 - HA => SUBCLASS : 4.1.1
1cyx_*_172 - HA => SUBCLASS : 4.1.7
1cyx_*_220 - EH => SUBCLASS : 2.1.1
1cyx_*_152 - AR => SUBCLASS : 3.1.2
1cyx_*_181 - AR => SUBCLASS : 4.13.1

Loops in ArchDB95 clusters

1cyx_*_220 - EH => SUBCLASS : 2.1.1
1cyx_*_147 - AR => SUBCLASS : 1.1.7
1cyx_*_152 - AR => SUBCLASS : 3.5.1
1cyx_*_152 - AR => SUBCLASS : 4.1.1
1cyx_*_181 - AR => SUBCLASS : 4.9.1
1cyx_*_127 - HA => SUBCLASS : 2.4.1
1cyx_*_137 - HA => SUBCLASS : 4.1.1
1cyx_*_172 - HA => SUBCLASS : 4.1.8

Loops in ArchDB-EC clusters

1cyx_*_172 - HA => SUBCLASS : 4.1.4

Loops not clustered in ArchDB

1cyx_*_191 - AR
1cyx_*_181 - AR
1cyx_*_161 - AR
1cyx_*_191 - AR
1cyx_*_161 - AR
1cyx_*_152 - AR
1cyx_*_147 - AR
1cyx_*_264 - EH
1cyx_*_172 - HA
1cyx_*_137 - HA
1cyx_*_127 - HA
1cyx_*_201 - HA
1cyx_*_201 - HA
1cyx_*_248 - HE
1cyx_*_228 - HH

1cyw - - percentage of sequence identity: 97
1fft B - percentage of sequence identity: 97
1fft G - percentage of sequence identity: 97