PDB: 1d5m Compound: hla class ii histocompatibility antigen Classification: IMMUNE SYSTEM Entry date in PDB: 2000-06-28 Resolution [Å]: 2.00 R-Factor: 0.236

CHAIN: A SWISS-PROT/TREMBL: P01903    KEYWORD: 3D-structure    Glycoprotein    MHC II    Polymorphism    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Human (Homo sapiens), HLA-DR group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Human (Homo sapiens), HLA-DR4 GO:  membrane    immune response    CHAIN: C SWISS-PROT/TREMBL: P01552    KEYWORD: 3D-structure    Enterotoxin    Signal    Superantigen    Toxin    SCOP: b.40.2.2 All beta proteins    OB-fold    Bacterial enterotoxins    Superantigen toxins, N-terminal domain    Staphylococcal enterotoxin B, SEB    Staphylococcus aureus SCOP: d.15.6.1 Alpha and beta proteins (a+b)    beta-Grasp (ubiquitin-like)    Superantigen toxins, C-terminal domain    Superantigen toxins, C-terminal domain    Staphylococcal enterotoxin B, SEB    Staphylococcus aureus GO:  extracellular region    pathogenesis

Image Source: PDB

Loops in ArchDB95 clusters

1d5m_B_136 - AR => SUBCLASS : 3.14.1
1d5m_B_79 - HE => SUBCLASS : 5.11.2
1d5m_B_23 - HA => SUBCLASS : 2.3.12

Loops not clustered in ArchDB

1d5m_B_114 - AR
1d5m_B_155 - AR
1d5m_B_142 - AR
1d5m_B_47 - EH
1d5m_B_9 - HA
1d5m_B_170 - HA
1d5m_B_148 - HA
1d5m_B_128 - HA
1d5m_B_98 - HA
1d5m_B_35 - HA
1d5m_B_55 - HH
1d5m_B_65 - HH
1d5m_B_74 - HH

1a6a B - percentage of sequence identity: 90
1aqd B - percentage of sequence identity: 92
1aqd E - percentage of sequence identity: 92
1aqd H - percentage of sequence identity: 92
1aqd K - percentage of sequence identity: 92
1bx2 B - percentage of sequence identity: 91
1bx2 E - percentage of sequence identity: 91
1bxt A - percentage of sequence identity: 62
1d5x B - percentage of sequence identity: 99
1d5z B - percentage of sequence identity: 99
1d6e B - percentage of sequence identity: 99
1d9k D - percentage of sequence identity: 65
1d9k H - percentage of sequence identity: 65
1dlh B - percentage of sequence identity: 92
1dlh E - percentage of sequence identity: 92
1es0 B - percentage of sequence identity: 61
1f3j B - percentage of sequence identity: 63
1f3j E - percentage of sequence identity: 63
1fne B - percentage of sequence identity: 76
1fne D - percentage of sequence identity: 76
1fng A - percentage of sequence identity: 80
1fng B - percentage of sequence identity: 76
1fng D - percentage of sequence identity: 76
1fv1 E - percentage of sequence identity: 90
1fyt B - percentage of sequence identity: 92
1h15 B - percentage of sequence identity: 90
1h15 E - percentage of sequence identity: 90
1hqr B - percentage of sequence identity: 90
1hxy B - percentage of sequence identity: 92
1i3r D - percentage of sequence identity: 76
1i3r F - percentage of sequence identity: 76
1i3r H - percentage of sequence identity: 76
1i4p A - percentage of sequence identity: 65
1iak B - percentage of sequence identity: 65
1iao B - percentage of sequence identity: 62
1iea B - percentage of sequence identity: 76
1iea D - percentage of sequence identity: 76
1ieb B - percentage of sequence identity: 76
1ieb D - percentage of sequence identity: 76
1j8h B - percentage of sequence identity: 100
1jk8 A - percentage of sequence identity: 62
1jk8 B - percentage of sequence identity: 66
1jl4 B - percentage of sequence identity: 65
1jwm B - percentage of sequence identity: 92
1jws B - percentage of sequence identity: 92
1jwu B - percentage of sequence identity: 92
1k2d B - percentage of sequence identity: 62
1kg0 B - percentage of sequence identity: 92
1klg B - percentage of sequence identity: 92
1klu B - percentage of sequence identity: 92
1klu D - percentage of sequence identity: 65
1kt2 B - percentage of sequence identity: 77
1kt2 D - percentage of sequence identity: 77
1ktd D - percentage of sequence identity: 77
1lnu D - percentage of sequence identity: 63
1lnu F - percentage of sequence identity: 63
1lnu H - percentage of sequence identity: 63
1lo5 B - percentage of sequence identity: 92
1muj B - percentage of sequence identity: 63
1pyw B - percentage of sequence identity: 92
1r5i B - percentage of sequence identity: 92
1r5i F - percentage of sequence identity: 92
1r5v B - percentage of sequence identity: 77
1r5v D - percentage of sequence identity: 77
1r5w B - percentage of sequence identity: 77
1r5w D - percentage of sequence identity: 77
1s9v E - percentage of sequence identity: 66
1seb B - percentage of sequence identity: 92
1seb F - percentage of sequence identity: 92
1sje B - percentage of sequence identity: 92
1sjh B - percentage of sequence identity: 92
1t5w B - percentage of sequence identity: 92
1t5w E - percentage of sequence identity: 92
1t5x B - percentage of sequence identity: 92
1u3h D - percentage of sequence identity: 62
1u3h H - percentage of sequence identity: 62
1ymm B - percentage of sequence identity: 91
1zgl B - percentage of sequence identity: 90
1zgl E - percentage of sequence identity: 90
1zgl H - percentage of sequence identity: 90
1zgl K - percentage of sequence identity: 90
2iad B - percentage of sequence identity: 63
2seb B - percentage of sequence identity: 99
3seb - - percentage of sequence identity: 100