PDB: 1dce Compound: rab geranylgeranyltransferase alpha subunit Classification: TRANSFERASE Entry date in PDB: 2000-03-24 Resolution [Å]: 2.00 R-Factor: 0.215

CHAIN: A SWISS-PROT/TREMBL: Q08602    KEYWORD: 3D-structure    Prenyltransferase    Repeat    Transferase    EC: 2.5.1.60 SCOP: a.118.6.1 All alpha proteins    alpha-alpha superhelix    Protein prenylyltransferase    Protein prenylyltransferase    Rab geranylgeranyltransferase alpha-subunit, N-terminal domain    Rat (Rattus norvegicus) SCOP: a.118.6.1 All alpha proteins    alpha-alpha superhelix    Protein prenylyltransferase    Protein prenylyltransferase    Rab geranylgeranyltransferase alpha-subunit, N-terminal domain    Rat (Rattus norvegicus) SCOP: b.7.4.1 All beta proteins    C2 domain-like    Rab geranylgeranyltransferase alpha-subunit, insert domain    Rab geranylgeranyltransferase alpha-subunit, insert domain    Rab geranylgeranyltransferase alpha-subunit, insert domain    Rat (Rattus norvegicus) SCOP: c.10.2.2 Alpha and beta proteins (a/b)    Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)    L domain-like    Rab geranylgeranyltransferase alpha-subunit, C-terminal domain    Rab geranylgeranyltransferase alpha-subunit, C-terminal domain    Rat (Rattus norvegicus) GO:  protein prenyltransferase activity    protein amino acid prenylation    CHAIN: B SWISS-PROT/TREMBL: Q08603    KEYWORD: 3D-structure    Prenyltransferase    Repeat    Transferase    Zinc    EC: 2.5.1.60 SCOP: a.102.4.3 All alpha proteins    alpha/alpha toroid    Terpenoid cyclases/Protein prenyltransferases    Protein prenyltransferases    Rab geranylgeranyltransferase, beta subunit    Rat (Rattus norvegicus) GO:  catalytic activity    CHAIN: C SWISS-PROT/TREMBL: Q08602    KEYWORD: 3D-structure    Prenyltransferase    Repeat    Transferase    EC: 2.5.1.60 SCOP: a.118.6.1 All alpha proteins    alpha-alpha superhelix    Protein prenylyltransferase    Protein prenylyltransferase    Rab geranylgeranyltransferase alpha-subunit, N-terminal domain    Rat (Rattus norvegicus) SCOP: a.118.6.1 All alpha proteins    alpha-alpha superhelix    Protein prenylyltransferase    Protein prenylyltransferase    Rab geranylgeranyltransferase alpha-subunit, N-terminal domain    Rat (Rattus norvegicus) SCOP: b.7.4.1 All beta proteins    C2 domain-like    Rab geranylgeranyltransferase alpha-subunit, insert domain    Rab geranylgeranyltransferase alpha-subunit, insert domain    Rab geranylgeranyltransferase alpha-subunit, insert domain    Rat (Rattus norvegicus) SCOP: c.10.2.2 Alpha and beta proteins (a/b)    Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)    L domain-like    Rab geranylgeranyltransferase alpha-subunit, C-terminal domain    Rab geranylgeranyltransferase alpha-subunit, C-terminal domain    Rat (Rattus norvegicus) GO:  protein prenyltransferase activity    protein amino acid prenylation    CHAIN: D SWISS-PROT/TREMBL: Q08603    KEYWORD: 3D-structure    Prenyltransferase    Repeat    Transferase    Zinc    EC: 2.5.1.60 SCOP: a.102.4.3 All alpha proteins    alpha/alpha toroid    Terpenoid cyclases/Protein prenyltransferases    Protein prenyltransferases    Rab geranylgeranyltransferase, beta subunit    Rat (Rattus norvegicus) GO:  catalytic activity

Image Source: PDB

Loops in ArchDB40 clusters

1dce_B_93 - EH => SUBCLASS : 0.1.2
1dce_B_37 - HH => SUBCLASS : 1.5.3
1dce_B_239 - HH => SUBCLASS : 7.1.1
1dce_B_46 - HH => SUBCLASS : 7.1.1
1dce_B_95 - HH => SUBCLASS : 7.1.1
1dce_B_143 - HH => SUBCLASS : 7.1.1
1dce_B_191 - HH => SUBCLASS : 7.1.1
1dce_B_212 - HH => SUBCLASS : 16.1.1

Loops in ArchDB95 clusters

1dce_B_93 - EH => SUBCLASS : 0.1.1
1dce_B_37 - HH => SUBCLASS : 1.6.3
1dce_B_239 - HH => SUBCLASS : 7.2.1
1dce_B_46 - HH => SUBCLASS : 7.2.1
1dce_B_95 - HH => SUBCLASS : 7.2.1
1dce_B_143 - HH => SUBCLASS : 7.2.1
1dce_B_191 - HH => SUBCLASS : 7.2.1
1dce_B_212 - HH => SUBCLASS : 16.2.1

Loops in ArchDB-EC clusters

1dce_B_212 - HH => SUBCLASS : 16.2.1

Loops not clustered in ArchDB

1dce_B_85 - HA
1dce_B_85 - HA
1dce_B_68 - HE
1dce_B_20 - HH
1dce_B_116 - HH
1dce_B_164 - HH
1dce_B_260 - HH
1dce_B_288 - HH

1dce B - percentage of sequence identity: 100
1dce D - percentage of sequence identity: 100
1ltx B - percentage of sequence identity: 100