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Information on 1dd9
PDB: 1dd9
Compound: DNA primase
Classification: TRANSFERASE
Entry date in PDB: 2000-04-07
Resolution [Å]: 1.60
R-Factor: 0.231


CHAIN: A
SWISS-PROT/TREMBL: P02923
   KEYWORD: 3D-structure    Complete proteome    DNA replication    DNA-directed RNA polymerase    Metal-binding    Primosome    Transferase    Zinc    Zinc-finger   
EC: 2.7.7.-
SCOP: e.13.1.1 Multi-domain proteins (alpha and beta)    DNA primase core    DNA primase core    DNA primase DnaG catalytic core    DNA primase DnaG catalytic core    Escherichia coli
GO:  DNA binding    DNA binding    DNA binding    DNA primase activity    DNA primase activity    DNA primase activity    nucleic acid binding    nucleic acid binding    nucleic acid binding    DNA modification    DNA modification    DNA modification    DNA replication    DNA replication    DNA replication    DNA replication, synthesis of RNA primer    DNA replication, synthesis of RNA primer    DNA replication, synthesis of RNA primer   
1dd9 Image
Image Source: PDB

Stored Loops of 1dd9

Loops in ArchDB40 clusters

1dd9_A_203 - HA => SUBCLASS : 4.2.2
1dd9_A_261 - EH => SUBCLASS : 2.1.1
1dd9_A_303 - EH => SUBCLASS : 2.4.9
1dd9_A_116 - HH => SUBCLASS : 1.1.51
1dd9_A_137 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1dd9_A_261 - EH => SUBCLASS : 2.1.1
1dd9_A_116 - HH => SUBCLASS : 1.1.16
1dd9_A_167 - HH => SUBCLASS : 1.1.38
1dd9_A_137 - HH => SUBCLASS : 3.1.1
1dd9_A_137 - HH => SUBCLASS : 3.1.5
1dd9_A_203 - HA => SUBCLASS : 3.1.2
1dd9_A_203 - HA => SUBCLASS : 5.1.1

Loops in ArchDB-EC clusters

1dd9_A_137 - HH => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1dd9_A_196 - AR
1dd9_A_196 - AR
1dd9_A_159 - EH
1dd9_A_230 - EH
1dd9_A_281 - EH
1dd9_A_334 - EH
1dd9_A_366 - EH
1dd9_A_215 - HA
1dd9_A_188 - HA
1dd9_A_203 - HA
1dd9_A_188 - HA
1dd9_A_215 - HA
1dd9_A_346 - HE
1dd9_A_150 - HE
1dd9_A_176 - HE
1dd9_A_248 - HE
1dd9_A_267 - HE
1dd9_A_291 - HE
1dd9_A_312 - HE
1dd9_A_385 - HH
1dd9_A_368 - HH

Homologous structures to 1dd9 classified in ArchDB

1dde A - percentage of sequence identity: 100
1eqn A - percentage of sequence identity: 100
1eqn B - percentage of sequence identity: 100
1eqn C - percentage of sequence identity: 100
1eqn D - percentage of sequence identity: 100
1eqn E - percentage of sequence identity: 100