PDB: 1dfa Compound: pi-scei endonuclease Classification: HYDROLASE Entry date in PDB: 1999-12-08 Resolution [Å]: 2.00 R-Factor: 0.210

CHAIN: A SWISS-PROT/TREMBL: P17255    KEYWORD: 3D-structure    ATP synthesis    ATP-binding    Autocatalytic cleavage    DNA-binding    Endonuclease    Hydrogen ion transport    Hydrolase    Intron homing    Nuclease    Protein splicing    EC: 3.6.3.14 SCOP: b.86.1.2 All beta proteins    Hedgehog/intein (Hint) domain    Hedgehog/intein (Hint) domain    Intein (protein splicing domain)    VMA1-derived endonuclease (VDE) PI-Scei intein    Baker's yeast (Saccharomyces cerevisiae) SCOP: b.86.1.2 All beta proteins    Hedgehog/intein (Hint) domain    Hedgehog/intein (Hint) domain    Intein (protein splicing domain)    VMA1-derived endonuclease (VDE) PI-Scei intein    Baker's yeast (Saccharomyces cerevisiae) SCOP: d.95.2.2 Alpha and beta proteins (a+b)    Homing endonuclease-like    Homing endonucleases    Intein endonuclease    VMA1-derived endonuclease (VDE) PI-SceI    Baker's yeast (Saccharomyces cerevisiae) SCOP: d.95.2.2 Alpha and beta proteins (a+b)    Homing endonuclease-like    Homing endonucleases    Intein endonuclease    VMA1-derived endonuclease (VDE) PI-SceI    Baker's yeast (Saccharomyces cerevisiae) GO:  proton-transporting two-sector ATPase complex    ATP binding    DNA binding    endonuclease activity    hydrogen-transporting ATP synthase activity, rotational mechanism    hydrogen-transporting ATPase activity, rotational mechanism    ATP biosynthesis    ATP synthesis coupled proton transport    intein-mediated protein splicing    protein splicing

Image Source: PDB

Loops in ArchDB-EC clusters

1dfa_A_344 - HE => SUBCLASS : 2.1.1

Loops not clustered in ArchDB

1dfa_A_15 - AR
1dfa_A_421 - AR
1dfa_A_417 - AR
1dfa_A_119 - AR
1dfa_A_80 - AR
1dfa_A_72 - AR
1dfa_A_154 - EH
1dfa_A_177 - EH
1dfa_A_336 - EH
1dfa_A_379 - EH
1dfa_A_443 - HA
1dfa_A_360 - HA
1dfa_A_329 - HA
1dfa_A_105 - HA
1dfa_A_88 - HA
1dfa_A_43 - HA
1dfa_A_7 - HA
1dfa_A_169 - HE
1dfa_A_312 - HE
1dfa_A_389 - HE
1dfa_A_287 - HH
1dfa_A_233 - HH
1dfa_A_205 - HH

1ef0 A - percentage of sequence identity: 100
1ef0 B - percentage of sequence identity: 100
1jva B - percentage of sequence identity: 99
1lws A - percentage of sequence identity: 100
1lwt A - percentage of sequence identity: 100
1um2 A - percentage of sequence identity: 99
1um2 B - percentage of sequence identity: 99
1vde A - percentage of sequence identity: 100
1vde B - percentage of sequence identity: 100