ArchDB - Biological DataBase of Protein Loops

Information on 1dgf

PDB: 1dgf
Compound: catalase
Classification: OXIDOREDUCTASE
Entry date in PDB: 2000-02-11
Resolution [Å]: 1.50
R-Factor: 0.172

CHAIN: A

SWISS-PROT/TREMBL: P04040
   KEYWORD: 3D-structure    Heme    Hydrogen peroxide    Iron    NADP    Oxidoreductase    Peroxidase    Peroxisome
EC: 1.11.1.6
SCOP: e.5.1.1 Multi-domain proteins (alpha and beta)    Heme-dependent catalases    Heme-dependent catalases    Heme-dependent catalases    Catalase I    Human (Homo sapiens)
GO:  catalase activity    electron transport    response to oxidative stress

CHAIN: B

CHAIN: C

CHAIN: D

Image Source: PDB

Stored Loops of 1dgf

Loops in ArchDB95 clusters

1dgf_A_276 - EH => SUBCLASS : 1.1.5
1dgf_A_343 - EH => SUBCLASS : 3.3.2
1dgf_A_311 - EH => SUBCLASS : 4.9.1
1dgf_A_229 - EH => SUBCLASS : 8.3.1
1dgf_A_141 - EH => SUBCLASS : 9.4.1
1dgf_A_214 - AR => SUBCLASS : 4.18.1
1dgf_A_247 - HH => SUBCLASS : 1.2.5
1dgf_A_179 - HH => SUBCLASS : 1.2.8
1dgf_A_472 - HH => SUBCLASS : 1.2.9
1dgf_A_247 - HH => SUBCLASS : 1.2.19
1dgf_A_453 - HH => SUBCLASS : 2.1.5
1dgf_A_161 - HH => SUBCLASS : 10.3.1
1dgf_A_131 - HA => SUBCLASS : 2.2.2
1dgf_A_220 - HA => SUBCLASS : 5.1.6

Loops in ArchDB-EC clusters

1dgf_A_161 - HH => SUBCLASS : 10.5.1

Loops not clustered in ArchDB

1dgf_A_214 - AR
1dgf_A_220 - HA
1dgf_A_131 - HA
1dgf_A_106 - HA
1dgf_A_78 - HA
1dgf_A_106 - HA
1dgf_A_78 - HA
1dgf_A_55 - HE
1dgf_A_325 - HE
1dgf_A_286 - HE
1dgf_A_260 - HE
1dgf_A_193 - HE
1dgf_A_349 - HH
1dgf_A_11 - HH
1dgf_A_441 - HH

Homologous structures to 1dgf classified in ArchDB

1dgb A - percentage of sequence identity: 100
1dgb B - percentage of sequence identity: 100
1dgb C - percentage of sequence identity: 100
1dgb D - percentage of sequence identity: 100
1dgf A - percentage of sequence identity: 100
1dgf B - percentage of sequence identity: 100
1dgf C - percentage of sequence identity: 100
1dgf D - percentage of sequence identity: 100
1dgg A - percentage of sequence identity: 100
1dgg B - percentage of sequence identity: 100
1dgg C - percentage of sequence identity: 100
1dgg D - percentage of sequence identity: 100
1dgh A - percentage of sequence identity: 100
1dgh B - percentage of sequence identity: 100
1dgh C - percentage of sequence identity: 100
1dgh D - percentage of sequence identity: 100
1f4j A - percentage of sequence identity: 100
1f4j B - percentage of sequence identity: 100
1f4j C - percentage of sequence identity: 100
1f4j D - percentage of sequence identity: 100
1qqw A - percentage of sequence identity: 100
1qqw B - percentage of sequence identity: 100
1qqw C - percentage of sequence identity: 100
1qqw D - percentage of sequence identity: 100
1tgu A - percentage of sequence identity: 91
1tgu B - percentage of sequence identity: 91
1tgu C - percentage of sequence identity: 91
1tgu D - percentage of sequence identity: 91
1th2 A - percentage of sequence identity: 91
1th2 B - percentage of sequence identity: 91
1th2 C - percentage of sequence identity: 91
1th2 D - percentage of sequence identity: 91
1th3 A - percentage of sequence identity: 91
1th3 B - percentage of sequence identity: 91
1th3 C - percentage of sequence identity: 91
1th3 D - percentage of sequence identity: 91
1th4 A - percentage of sequence identity: 91
1th4 B - percentage of sequence identity: 91
1th4 C - percentage of sequence identity: 91
1th4 D - percentage of sequence identity: 91
4blc A - percentage of sequence identity: 91
4blc B - percentage of sequence identity: 91
4blc C - percentage of sequence identity: 91
4blc D - percentage of sequence identity: 91
7cat A - percentage of sequence identity: 91
7cat B - percentage of sequence identity: 91
8cat A - percentage of sequence identity: 91
8cat B - percentage of sequence identity: 91