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Information on 1dkf
PDB: 1dkf
Compound: retinoid x receptor-alpha
Classification: HORMONE/GROWTH FACTOR RECEPTOR
Entry date in PDB: 2000-04-19
Resolution [Å]: 2.50
R-Factor: 0.203


CHAIN: A
SWISS-PROT/TREMBL: P28700
   KEYWORD: 3D-structure    DNA-binding    Multigene family    Nuclear protein    Receptor    Transcription regulation    Zinc-finger   
SCOP: a.123.1.1 All alpha proteins    Nuclear receptor ligand-binding domain    Nuclear receptor ligand-binding domain    Nuclear receptor ligand-binding domain    Retinoid-X receptor alpha (RXR-alpha)    Mouse (Mus musculus)
GO:  nucleus    DNA binding    ligand-dependent nuclear receptor activity    steroid binding    steroid hormone receptor activity    transcription factor activity    regulation of transcription, DNA-dependent   


CHAIN: B
SWISS-PROT/TREMBL: P10276
   KEYWORD: 3D-structure    Alternative splicing    Chromosomal translocation    DNA-binding    Multigene family    Nuclear protein    Proto-oncogene    Receptor    Transcription regulation    Zinc-finger   
SCOP: a.123.1.1 All alpha proteins    Nuclear receptor ligand-binding domain    Nuclear receptor ligand-binding domain    Nuclear receptor ligand-binding domain    Retinoic acid receptor alpha (RAR-alpha)    Human (Homo sapiens)
GO:  nucleus    DNA binding    ligand-dependent nuclear receptor activity    retinoic acid receptor activity    steroid hormone receptor activity    transcription factor activity    regulation of transcription, DNA-dependent   
1dkf Image
Image Source: PDB

Stored Loops of 1dkf

Loops in ArchDB95 clusters

1dkf_B_306 - HH => SUBCLASS : 3.17.1
1dkf_B_345 - HH => SUBCLASS : 4.21.1
1dkf_B_222 - HH => SUBCLASS : 8.1.1
1dkf_B_323 - HH => SUBCLASS : 10.2.1
1dkf_B_254 - HE => SUBCLASS : 1.3.1
1dkf_B_254 - HE => SUBCLASS : 1.4.1
1dkf_B_283 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1dkf_B_291 - EH
1dkf_B_277 - HA
1dkf_B_183 - HH
1dkf_B_294 - HH
1dkf_B_373 - HH
1dkf_B_380 - HH

Homologous structures to 1dkf classified in ArchDB

1exa A - percentage of sequence identity: 83
1exx A - percentage of sequence identity: 83
1fcx A - percentage of sequence identity: 83
1fcz A - percentage of sequence identity: 83
1fd0 A - percentage of sequence identity: 83
1mvc A - percentage of sequence identity: 99
1xap A - percentage of sequence identity: 88
1xdk B - percentage of sequence identity: 88
1xdk F - percentage of sequence identity: 88
2lbd - - percentage of sequence identity: 83
3lbd - - percentage of sequence identity: 83
4lbd - - percentage of sequence identity: 83