PDB: 1dkr Compound: phosphoribosyl pyrophosphate synthetase Classification: TRANSFERASE Entry date in PDB: 2000-04-05 Resolution [Å]: 2.30 R-Factor: 0.180

CHAIN: A SWISS-PROT/TREMBL: P14193    KEYWORD: 3D-structure    Complete proteome    Kinase    Magnesium    Nucleotide biosynthesis    Transferase    EC: 2.7.6.1 SCOP: c.61.1.2 Alpha and beta proteins (a/b)    PRTase-like    PRTase-like    Phosphoribosylpyrophosphate synthetase    Phosphoribosylpyrophosphate synthetase    Bacillus subtilis SCOP: c.61.1.2 Alpha and beta proteins (a/b)    PRTase-like    PRTase-like    Phosphoribosylpyrophosphate synthetase    Phosphoribosylpyrophosphate synthetase    Bacillus subtilis GO:  lipoate-protein ligase B activity    ribose-phosphate diphosphokinase activity    nucleoside metabolism    nucleotide biosynthesis    ribonucleoside monophosphate biosynthesis    CHAIN: B SWISS-PROT/TREMBL: P14193    KEYWORD: 3D-structure    Complete proteome    Kinase    Magnesium    Nucleotide biosynthesis    Transferase    EC: 2.7.6.1 SCOP: c.61.1.2 Alpha and beta proteins (a/b)    PRTase-like    PRTase-like    Phosphoribosylpyrophosphate synthetase    Phosphoribosylpyrophosphate synthetase    Bacillus subtilis SCOP: c.61.1.2 Alpha and beta proteins (a/b)    PRTase-like    PRTase-like    Phosphoribosylpyrophosphate synthetase    Phosphoribosylpyrophosphate synthetase    Bacillus subtilis GO:  lipoate-protein ligase B activity    ribose-phosphate diphosphokinase activity    nucleoside metabolism    nucleotide biosynthesis    ribonucleoside monophosphate biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1dkr_A_178 - HE => SUBCLASS : 1.1.2
1dkr_A_230 - HE => SUBCLASS : 3.1.1
1dkr_A_68 - HE => SUBCLASS : 3.1.1
1dkr_A_113 - HE => SUBCLASS : 3.1.1
1dkr_A_68 - HE => SUBCLASS : 3.6.1
1dkr_A_230 - HE => SUBCLASS : 3.6.7
1dkr_A_35 - HA => SUBCLASS : 3.1.1
1dkr_A_147 - EH => SUBCLASS : 1.1.36
1dkr_A_168 - EH => SUBCLASS : 2.1.8
1dkr_A_225 - EH => SUBCLASS : 3.17.1
1dkr_A_218 - AR => SUBCLASS : 1.1.3
1dkr_A_246 - AR => SUBCLASS : 2.1.5

Loops in ArchDB95 clusters

1dkr_A_147 - EH => SUBCLASS : 0.1.60
1dkr_A_147 - EH => SUBCLASS : 1.1.56
1dkr_A_168 - EH => SUBCLASS : 2.1.5
1dkr_A_225 - EH => SUBCLASS : 3.17.1
1dkr_A_225 - EH => SUBCLASS : 3.17.3
1dkr_A_218 - AR => SUBCLASS : 1.2.1
1dkr_A_218 - AR => SUBCLASS : 1.2.6
1dkr_A_246 - AR => SUBCLASS : 1.2.6
1dkr_A_230 - HE => SUBCLASS : 3.1.1
1dkr_A_68 - HE => SUBCLASS : 3.1.1
1dkr_A_113 - HE => SUBCLASS : 3.1.1
1dkr_A_178 - HE => SUBCLASS : 3.2.11
1dkr_A_178 - HE => SUBCLASS : 3.2.16
1dkr_A_178 - HE => SUBCLASS : 3.2.18
1dkr_A_18 - HE => SUBCLASS : 5.10.2
1dkr_A_35 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1dkr_A_45 - AR
1dkr_A_209 - AR
1dkr_A_289 - EH
1dkr_A_253 - EH
1dkr_A_89 - EH
1dkr_A_57 - EH
1dkr_A_9 - EH
1dkr_A_269 - HA
1dkr_A_192 - HA
1dkr_A_128 - HA
1dkr_A_153 - HE
1dkr_A_260 - HE

1dkr A - percentage of sequence identity: 100
1dkr B - percentage of sequence identity: 100
1dku A - percentage of sequence identity: 100
1dku B - percentage of sequence identity: 100
1ibs A - percentage of sequence identity: 100
1ibs B - percentage of sequence identity: 100