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Information on 1e5d
PDB: 1e5d
Compound: rubredoxin
Classification: OXIDOREDUCTASE
Entry date in PDB: 2000-11-17
Resolution [Å]: 2.50
R-Factor: 0.179


CHAIN: A
SWISS-PROT/TREMBL: Q9F0J6
   KEYWORD: 3D-structure    Electron transport    Flavoprotein    FMN    Iron    Metal-binding    Oxidoreductase    Transport   
EC: 1.-.-.-
SCOP: c.23.5.1 Alpha and beta proteins (a/b)    Flavodoxin-like    Flavoproteins    Flavodoxin-related    Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain    Desulfovibrio gigas
SCOP: d.157.1.3 Alpha and beta proteins (a+b)    Metallo-hydrolase/oxidoreductase    Metallo-hydrolase/oxidoreductase    Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain    Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain    Desulfovibrio gigas
GO:  FMN binding    oxidoreductase activity   


CHAIN: B
SWISS-PROT/TREMBL: Q9F0J6
   KEYWORD: 3D-structure    Electron transport    Flavoprotein    FMN    Iron    Metal-binding    Oxidoreductase    Transport   
EC: 1.-.-.-
SCOP: c.23.5.1 Alpha and beta proteins (a/b)    Flavodoxin-like    Flavoproteins    Flavodoxin-related    Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain    Desulfovibrio gigas
SCOP: d.157.1.3 Alpha and beta proteins (a+b)    Metallo-hydrolase/oxidoreductase    Metallo-hydrolase/oxidoreductase    Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain    Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain    Desulfovibrio gigas
GO:  FMN binding    oxidoreductase activity   
1e5d Image
Image Source: PDB

Stored Loops of 1e5d

Loops in ArchDB40 clusters

1e5d_A_22 - HA => SUBCLASS : 3.5.1
1e5d_A_151 - HA => SUBCLASS : 4.1.1
1e5d_A_230 - EH => SUBCLASS : 1.2.1
1e5d_A_74 - EH => SUBCLASS : 4.26.1
1e5d_A_371 - EH => SUBCLASS : 4.40.1
1e5d_A_283 - EH => SUBCLASS : 5.42.1
1e5d_A_121 - AR => SUBCLASS : 3.1.1
1e5d_A_121 - AR => SUBCLASS : 3.3.1
1e5d_A_183 - HH => SUBCLASS : 1.5.3

Loops in ArchDB95 clusters

1e5d_A_230 - EH => SUBCLASS : 1.3.1
1e5d_A_74 - EH => SUBCLASS : 4.31.1
1e5d_A_371 - EH => SUBCLASS : 4.32.2
1e5d_A_283 - EH => SUBCLASS : 5.8.4
1e5d_A_283 - EH => SUBCLASS : 5.75.1
1e5d_A_121 - AR => SUBCLASS : 1.1.1
1e5d_A_121 - AR => SUBCLASS : 3.3.1
1e5d_A_183 - HH => SUBCLASS : 1.6.3
1e5d_A_265 - HE => SUBCLASS : 1.1.1
1e5d_A_294 - HE => SUBCLASS : 2.2.1
1e5d_A_88 - HE => SUBCLASS : 3.3.2
1e5d_A_88 - HE => SUBCLASS : 3.3.4
1e5d_A_202 - HE => SUBCLASS : 6.16.1
1e5d_A_350 - HE => SUBCLASS : 8.4.1
1e5d_A_33 - HA => SUBCLASS : 1.1.1
1e5d_A_129 - HA => SUBCLASS : 3.6.1
1e5d_A_22 - HA => SUBCLASS : 3.7.1
1e5d_A_151 - HA => SUBCLASS : 4.1.1

Loops in ArchDB-EC clusters

1e5d_A_183 - HH => SUBCLASS : 1.7.2

Loops not clustered in ArchDB

1e5d_A_27 - AR
1e5d_A_121 - AR
1e5d_A_27 - AR
1e5d_A_10 - AR
1e5d_A_10 - AR
1e5d_A_46 - EH
1e5d_A_254 - EH
1e5d_A_160 - EH
1e5d_A_306 - EH
1e5d_A_99 - EH
1e5d_A_338 - EH
1e5d_A_22 - HA
1e5d_A_33 - HA
1e5d_A_129 - HA
1e5d_A_136 - HA
1e5d_A_151 - HA
1e5d_A_221 - HA
1e5d_A_4 - HA
1e5d_A_221 - HA
1e5d_A_136 - HA
1e5d_A_4 - HA
1e5d_A_320 - HE
1e5d_A_233 - HE
1e5d_A_104 - HE
1e5d_A_56 - HE
1e5d_A_82 - HH

Homologous structures to 1e5d classified in ArchDB

1e5d A - percentage of sequence identity: 100
1e5d B - percentage of sequence identity: 100