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Information on 1edm
PDB: 1edm
Compound: factor ix
Classification: COAGULATION FACTOR
Entry date in PDB: 1996-10-14
Resolution [Å]: 1.50
R-Factor: 0.157


CHAIN: B
SWISS-PROT/TREMBL: P00740
   KEYWORD: 3D-structure    Blood coagulation    Calcium-binding    Disease mutation    EGF-like domain    Gamma-carboxyglutamic acid    Glycoprotein    Hemophilia    Hydrolase    Hydroxylation    Pharmaceutical    Phosphorylation    Plasma    Polymorphism    Repeat    Serine protease    Signal    Sulfation    Vitamin K    Zymogen   
EC: 3.4.21.22
SCOP: g.3.11.1 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    EGF-type module    Factor IX (IXa)    Human (Homo sapiens)
GO:  extracellular region    calcium ion binding    chymotrypsin activity    trypsin activity    proteolysis and peptidolysis   


CHAIN: C
SWISS-PROT/TREMBL: P00740
   KEYWORD: 3D-structure    Blood coagulation    Calcium-binding    Disease mutation    EGF-like domain    Gamma-carboxyglutamic acid    Glycoprotein    Hemophilia    Hydrolase    Hydroxylation    Pharmaceutical    Phosphorylation    Plasma    Polymorphism    Repeat    Serine protease    Signal    Sulfation    Vitamin K    Zymogen   
EC: 3.4.21.22
SCOP: g.3.11.1 Small proteins    Knottins (small inhibitors, toxins, lectins)    EGF/Laminin    EGF-type module    Factor IX (IXa)    Human (Homo sapiens)
GO:  extracellular region    calcium ion binding    chymotrypsin activity    trypsin activity    proteolysis and peptidolysis   
1edm Image
Image Source: PDB

Stored Loops of 1edm

Loops in ArchDB40 clusters

1edm_B_61 - HA => SUBCLASS : 2.6.1

Loops in ArchDB95 clusters

1edm_B_61 - HA => SUBCLASS : 2.4.1

Loops in ArchDB-EC clusters

1edm_B_61 - HA => SUBCLASS : 2.5.1

Loops not clustered in ArchDB

1edm_B_61 - HA

Homologous structures to 1edm classified in ArchDB

1apo - - percentage of sequence identity: 68
1bf9 - - percentage of sequence identity: 67
1c5m F - percentage of sequence identity: 65
1ccf - - percentage of sequence identity: 68
1dan L - percentage of sequence identity: 67
1dva L - percentage of sequence identity: 67
1dva M - percentage of sequence identity: 67
1edm B - percentage of sequence identity: 100
1edm C - percentage of sequence identity: 100
1ezq B - percentage of sequence identity: 65
1f0r B - percentage of sequence identity: 65
1f0s B - percentage of sequence identity: 65
1f7e A - percentage of sequence identity: 67
1f7m A - percentage of sequence identity: 67
1fak L - percentage of sequence identity: 67
1fax L - percentage of sequence identity: 65
1ff7 A - percentage of sequence identity: 67
1ffm A - percentage of sequence identity: 67
1g2l B - percentage of sequence identity: 65
1g2m B - percentage of sequence identity: 65
1ioe L - percentage of sequence identity: 65
1iqe L - percentage of sequence identity: 65
1iqf L - percentage of sequence identity: 65
1iqg L - percentage of sequence identity: 65
1iqh L - percentage of sequence identity: 65
1iqi L - percentage of sequence identity: 65
1iqj L - percentage of sequence identity: 65
1iqk L - percentage of sequence identity: 65
1iql L - percentage of sequence identity: 65
1iqm L - percentage of sequence identity: 65
1iqn L - percentage of sequence identity: 65
1ixa - - percentage of sequence identity: 100
1j9c L - percentage of sequence identity: 65
1ksn B - percentage of sequence identity: 65
1lpg A - percentage of sequence identity: 65
1lpk A - percentage of sequence identity: 65
1lpz A - percentage of sequence identity: 65
1lqd A - percentage of sequence identity: 65
1nfu B - percentage of sequence identity: 65
1nfw B - percentage of sequence identity: 65
1nfx B - percentage of sequence identity: 65
1nfy B - percentage of sequence identity: 65
1o5d L - percentage of sequence identity: 67
1p0s L - percentage of sequence identity: 65
1pfx L - percentage of sequence identity: 89
1qfk L - percentage of sequence identity: 64
1w0y L - percentage of sequence identity: 67
1w2k L - percentage of sequence identity: 67
1whe - - percentage of sequence identity: 68
1whf - - percentage of sequence identity: 68
1wqv L - percentage of sequence identity: 67
1wss L - percentage of sequence identity: 67
1wtg L - percentage of sequence identity: 67
1wu1 B - percentage of sequence identity: 65
1wun L - percentage of sequence identity: 67
1wv7 L - percentage of sequence identity: 67
1x7a L - percentage of sequence identity: 89
1xka L - percentage of sequence identity: 65
1xkb A - percentage of sequence identity: 65
1xkb B - percentage of sequence identity: 65
1z6j L - percentage of sequence identity: 67
2b7d L - percentage of sequence identity: 67