PDB: 1ehk Compound: ba3-type cytochrome-c oxidase Classification: OXIDOREDUCTASE Entry date in PDB: 2001-02-21 Resolution [Å]: 2.40 R-Factor: 0.222

CHAIN: B SWISS-PROT/TREMBL: P98052    KEYWORD: 3D-structure    Copper    Electron transport    Oxidoreductase    Respiratory chain    Transmembrane    EC: 1.9.3.1 SCOP: b.6.1.2 All beta proteins    Cupredoxin-like    Cupredoxins    Periplasmic domain of cytochrome c oxidase subunit II    Cytochrome c oxidase    Thermus thermophilus, ba3 type SCOP: f.17.2.1 Membrane and cell surface proteins and peptides    Transmembrane helix hairpin    Cytochrome c oxidase subunit II-like, transmembrane region    Cytochrome c oxidase subunit II-like, transmembrane region    Bacterial ba3 type cytochrome c oxidase subunit II    Thermus thermophilus GO:  membrane    copper ion binding    cytochrome-c oxidase activity    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1ehk_B_124 - AR => SUBCLASS : 3.3.2
1ehk_B_102 - AR => SUBCLASS : 4.10.2
1ehk_A_404 - HH => SUBCLASS : 5.1.2
1ehk_A_79 - HH => SUBCLASS : 5.1.3
1ehk_A_79 - HH => SUBCLASS : 5.3.3
1ehk_A_334 - HH => SUBCLASS : 5.30.1
1ehk_A_52 - HH => SUBCLASS : 6.16.1

Loops in ArchDB95 clusters

1ehk_B_124 - AR => SUBCLASS : 1.1.2
1ehk_B_124 - AR => SUBCLASS : 3.6.1
1ehk_B_102 - AR => SUBCLASS : 4.30.2
1ehk_A_372 - HH => SUBCLASS : 3.11.3
1ehk_A_79 - HH => SUBCLASS : 5.1.2
1ehk_A_404 - HH => SUBCLASS : 5.1.3
1ehk_A_404 - HH => SUBCLASS : 5.4.4
1ehk_A_404 - HH => SUBCLASS : 5.8.1
1ehk_A_52 - HH => SUBCLASS : 6.43.1

Loops not clustered in ArchDB

1ehk_B_89 - AR
1ehk_B_95 - AR
1ehk_B_133 - AR
1ehk_A_218 - EH
1ehk_B_71 - HA
1ehk_B_78 - HA
1ehk_B_114 - HA
1ehk_B_143 - HA
1ehk_B_4 - HE
1ehk_A_527 - HE
1ehk_A_208 - HE
1ehk_A_464 - HH
1ehk_A_415 - HH
1ehk_A_392 - HH
1ehk_A_380 - HH
1ehk_A_344 - HH
1ehk_A_307 - HH
1ehk_A_292 - HH
1ehk_A_262 - HH
1ehk_A_251 - HH
1ehk_A_234 - HH
1ehk_A_221 - HH
1ehk_A_181 - HH
1ehk_A_143 - HH
1ehk_A_103 - HH
1ehk_A_65 - HH
1ehk_A_17 - HH
1ehk_A_517 - HH

1xme B - percentage of sequence identity: 100
2cua B - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0