PDB: 1ek9 Compound: outer membrane protein tolc Classification: MEMBRANE PROTEIN Entry date in PDB: 2000-06-28 Resolution [Å]: 2.10 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P02930    KEYWORD: 3D-structure    Complete proteome    Membrane    Outer membrane    Repeat    Signal    Transmembrane    Transport    SCOP: f.5.1.1 Membrane and cell surface proteins and peptides    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Escherichia coli GO:  outer membrane    transporter activity    protein transport    transport    CHAIN: B SWISS-PROT/TREMBL: P02930    KEYWORD: 3D-structure    Complete proteome    Membrane    Outer membrane    Repeat    Signal    Transmembrane    Transport    SCOP: f.5.1.1 Membrane and cell surface proteins and peptides    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Escherichia coli GO:  outer membrane    transporter activity    protein transport    transport    CHAIN: C SWISS-PROT/TREMBL: P02930    KEYWORD: 3D-structure    Complete proteome    Membrane    Outer membrane    Repeat    Signal    Transmembrane    Transport    SCOP: f.5.1.1 Membrane and cell surface proteins and peptides    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Integral outer membrane protein TolC, efflux pump component    Escherichia coli GO:  outer membrane    transporter activity    protein transport    transport

Image Source: PDB

Loops in ArchDB40 clusters

1ek9_A_221 - HE => SUBCLASS : 2.8.7
1ek9_A_209 - HH => SUBCLASS : 1.1.7
1ek9_A_360 - HH => SUBCLASS : 4.1.3
1ek9_A_360 - HH => SUBCLASS : 4.4.2

Loops in ArchDB95 clusters

1ek9_A_209 - HH => SUBCLASS : 1.1.6
1ek9_A_360 - HH => SUBCLASS : 4.1.2
1ek9_A_409 - HE => SUBCLASS : 0.1.11
1ek9_A_409 - HE => SUBCLASS : 0.1.16
1ek9_A_221 - HE => SUBCLASS : 2.6.3

Loops not clustered in ArchDB

1ek9_A_247 - AR
1ek9_A_260 - AR
1ek9_A_61 - EH
1ek9_A_192 - EH
1ek9_A_281 - EH
1ek9_A_41 - HA
1ek9_A_151 - HE
1ek9_A_15 - HE
1ek9_A_6 - HH
1ek9_A_80 - HH
1ek9_A_300 - HH
1ek9_A_369 - HH

1ek9 A - percentage of sequence identity: 100
1ek9 B - percentage of sequence identity: 100
1ek9 C - percentage of sequence identity: 100
1tqq A - percentage of sequence identity: 100
1tqq B - percentage of sequence identity: 100
1tqq C - percentage of sequence identity: 100