PDB: 1epf Compound: neural cell adhesion molecule Classification: CELL ADHESION Entry date in PDB: 2000-10-09 Resolution [Å]: 1.85 R-Factor: 0.201

CHAIN: A SWISS-PROT/TREMBL: P13596    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) GO:  membrane    cell adhesion    CHAIN: B SWISS-PROT/TREMBL: P13596    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) GO:  membrane    cell adhesion    CHAIN: C SWISS-PROT/TREMBL: P13596    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) GO:  membrane    cell adhesion    CHAIN: D SWISS-PROT/TREMBL: P13596    KEYWORD: 3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    3D-structure    Alternative splicing    Cell adhesion    Glycoprotein    Heparin-binding    Immunoglobulin domain    Repeat    Signal    Transmembrane    SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) SCOP: b.1.1.4 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    I set domains    Neural cell adhesion molecule (NCAM)    Rat (Rattus norvegicus) GO:  membrane    cell adhesion

Image Source: PDB

Loops in ArchDB40 clusters

1epf_A_129 - HA => SUBCLASS : 2.1.1
1epf_A_147 - HA => SUBCLASS : 3.1.1
1epf_A_32 - HA => SUBCLASS : 3.1.1
1epf_A_166 - HA => SUBCLASS : 4.1.8
1epf_A_59 - AR => SUBCLASS : 7.1.1
1epf_A_155 - AR => SUBCLASS : 7.1.1

Loops in ArchDB95 clusters

1epf_A_59 - AR => SUBCLASS : 7.1.1
1epf_A_155 - AR => SUBCLASS : 7.1.1
1epf_A_129 - HA => SUBCLASS : 2.1.1
1epf_A_147 - HA => SUBCLASS : 3.1.1
1epf_A_32 - HA => SUBCLASS : 3.1.1
1epf_A_166 - HA => SUBCLASS : 4.1.9

Loops not clustered in ArchDB

1epf_A_3 - AR
1epf_A_121 - AR
1epf_A_116 - AR
1epf_A_108 - AR
1epf_A_100 - AR
1epf_A_85 - AR
1epf_A_42 - AR
1epf_A_18 - AR
1epf_A_10 - AR
1epf_A_137 - AR
1epf_A_73 - HA
1epf_A_50 - HA

1epf A - percentage of sequence identity: 100
1epf B - percentage of sequence identity: 100
1epf C - percentage of sequence identity: 100
1epf D - percentage of sequence identity: 100
1qz1 A - percentage of sequence identity: 100
2ncm - - percentage of sequence identity: 100
3ncm A - percentage of sequence identity: 98