PDB: 1fng Compound: mhc class ii i-ek, alpha chain Classification: IMMUNE SYSTEM Entry date in PDB: 2001-03-07 Resolution [Å]: 1.90 R-Factor: 0.221

CHAIN: A SWISS-PROT/TREMBL: P04224    KEYWORD: Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-E group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-EK GO:   CHAIN: B SWISS-PROT/TREMBL: P02089    KEYWORD: Erythrocyte    Heme    Oxygen transport    Polymorphism    Transport    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-E group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-EK GO:   CHAIN: C SWISS-PROT/TREMBL: P04224    KEYWORD: Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-E group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-EK GO:   CHAIN: D SWISS-PROT/TREMBL: P02089    KEYWORD: Erythrocyte    Heme    Oxygen transport    Polymorphism    Transport    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-E group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-EK GO:

Image Source: PDB

Loops in ArchDB95 clusters

1fng_A_40 - EH => SUBCLASS : 12.3.1
1fng_A_126 - AR => SUBCLASS : 1.2.9
1fng_A_103 - AR => SUBCLASS : 2.12.1
1fng_B_136 - AR => SUBCLASS : 3.14.1
1fng_B_155 - AR => SUBCLASS : 4.12.4
1fng_B_55 - HH => SUBCLASS : 1.1.1
1fng_B_55 - HH => SUBCLASS : 1.1.4
1fng_B_79 - HE => SUBCLASS : 5.11.2
1fng_A_56 - HE => SUBCLASS : 10.2.1
1fng_B_24 - HA => SUBCLASS : 2.3.12
1fng_A_7 - HA => SUBCLASS : 3.1.1
1fng_A_29 - HA => SUBCLASS : 4.1.1
1fng_B_35 - HA => SUBCLASS : 4.1.10
1fng_B_171 - HA => SUBCLASS : 4.4.1
1fng_A_161 - HA => SUBCLASS : 4.4.1
1fng_A_138 - HA => SUBCLASS : 4.43.1
1fng_A_7 - HA => SUBCLASS : 5.1.3
1fng_A_138 - HA => SUBCLASS : 5.17.1
1fng_A_88 - HA => SUBCLASS : 9.8.1

Loops not clustered in ArchDB

1fng_B_114 - AR
1fng_A_132 - AR
1fng_A_145 - AR
1fng_B_142 - AR
1fng_B_47 - EH
1fng_B_148 - HA
1fng_B_128 - HA
1fng_A_19 - HA
1fng_B_98 - HA
1fng_B_9 - HA
1fng_A_118 - HA
1fng_B_65 - HH

1a6a A - percentage of sequence identity: 80
1aqd A - percentage of sequence identity: 79
1aqd D - percentage of sequence identity: 79
1aqd G - percentage of sequence identity: 79
1aqd J - percentage of sequence identity: 79
1bx2 A - percentage of sequence identity: 80
1bx2 D - percentage of sequence identity: 80
1d5m A - percentage of sequence identity: 80
1d5m B - percentage of sequence identity: 76
1d5x A - percentage of sequence identity: 80
1d5z A - percentage of sequence identity: 80
1d6e A - percentage of sequence identity: 80
1dlh A - percentage of sequence identity: 80
1dlh D - percentage of sequence identity: 80
1fne A - percentage of sequence identity: 100
1fne C - percentage of sequence identity: 100
1fng A - percentage of sequence identity: 100
1fng C - percentage of sequence identity: 100
1fv1 A - percentage of sequence identity: 80
1fv1 B - percentage of sequence identity: 74
1fv1 D - percentage of sequence identity: 80
1fyt A - percentage of sequence identity: 80
1h15 A - percentage of sequence identity: 80
1h15 D - percentage of sequence identity: 80
1hqr A - percentage of sequence identity: 80
1hxy A - percentage of sequence identity: 80
1i3r A - percentage of sequence identity: 98
1i3r B - percentage of sequence identity: 100
1i3r C - percentage of sequence identity: 98
1i3r E - percentage of sequence identity: 98
1i3r G - percentage of sequence identity: 98
1iea A - percentage of sequence identity: 99
1iea C - percentage of sequence identity: 99
1ieb A - percentage of sequence identity: 99
1ieb C - percentage of sequence identity: 99
1j8h A - percentage of sequence identity: 80
1jwm A - percentage of sequence identity: 80
1jws A - percentage of sequence identity: 80
1jwu A - percentage of sequence identity: 80
1kg0 A - percentage of sequence identity: 80
1klg A - percentage of sequence identity: 80
1klu A - percentage of sequence identity: 80
1kt2 A - percentage of sequence identity: 100
1kt2 C - percentage of sequence identity: 100
1ktd A - percentage of sequence identity: 99
1ktd B - percentage of sequence identity: 100
1ktd C - percentage of sequence identity: 99
1lnu B - percentage of sequence identity: 65
1lo5 A - percentage of sequence identity: 80
1pyw A - percentage of sequence identity: 80
1r5i A - percentage of sequence identity: 80
1r5i E - percentage of sequence identity: 80
1r5v A - percentage of sequence identity: 100
1r5v C - percentage of sequence identity: 100
1r5w A - percentage of sequence identity: 100
1r5w C - percentage of sequence identity: 100
1s9v B - percentage of sequence identity: 66
1seb A - percentage of sequence identity: 80
1seb E - percentage of sequence identity: 80
1sje A - percentage of sequence identity: 80
1sjh A - percentage of sequence identity: 80
1t5w A - percentage of sequence identity: 80
1t5w D - percentage of sequence identity: 80
1t5x A - percentage of sequence identity: 80
1uvq B - percentage of sequence identity: 68
1ymm A - percentage of sequence identity: 79
1zgl A - percentage of sequence identity: 80
1zgl D - percentage of sequence identity: 80
1zgl G - percentage of sequence identity: 80
1zgl J - percentage of sequence identity: 80
2seb A - percentage of sequence identity: 80