PDB: 1g5h Compound: mitochondrial DNA polymerase accessory subunit Classification: DNA BINDING PROTEIN Entry date in PDB: 2001-03-14 Resolution [Å]: 1.95 R-Factor: 0.183

CHAIN: D SWISS-PROT/TREMBL: Q9QZM2    KEYWORD: 3D-structure    DNA replication    DNA-binding    DNA-directed DNA polymerase    Mitochondrion    Transferase    Transit peptide    EC: 2.7.7.7 SCOP: c.51.1.1 Alpha and beta proteins (a/b)    Anticodon-binding domain-like    Anticodon-binding domain of Class II aaRS    Anticodon-binding domain of Class II aaRS    The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain    Mouse (Mus musculus) SCOP: d.104.1.1 Alpha and beta proteins (a+b)    Class II aaRS and biotin synthetases    Class II aaRS and biotin synthetases    Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain    The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain    Mouse (Mus musculus) GO:  ATP binding    glycine-tRNA ligase activity    tRNA ligase activity    glycyl-tRNA aminoacylation    protein biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1g5h_A_366 - HE => SUBCLASS : 2.1.1
1g5h_A_366 - HE => SUBCLASS : 2.2.1
1g5h_A_419 - HE => SUBCLASS : 4.3.3
1g5h_A_259 - HA => SUBCLASS : 2.2.19
1g5h_A_298 - HA => SUBCLASS : 2.3.1
1g5h_A_247 - HA => SUBCLASS : 5.1.5
1g5h_A_204 - EH => SUBCLASS : 1.1.18
1g5h_A_204 - EH => SUBCLASS : 1.1.59
1g5h_A_154 - EH => SUBCLASS : 3.7.3
1g5h_A_99 - AR => SUBCLASS : 2.1.7

Loops in ArchDB95 clusters

1g5h_A_204 - EH => SUBCLASS : 0.1.28
1g5h_A_204 - EH => SUBCLASS : 1.1.1
1g5h_A_154 - EH => SUBCLASS : 3.3.2
1g5h_A_99 - AR => SUBCLASS : 3.8.2
1g5h_A_366 - HE => SUBCLASS : 2.1.1
1g5h_A_419 - HE => SUBCLASS : 2.1.7
1g5h_A_138 - HE => SUBCLASS : 2.7.1
1g5h_A_259 - HA => SUBCLASS : 2.2.2
1g5h_A_298 - HA => SUBCLASS : 2.3.1
1g5h_A_247 - HA => SUBCLASS : 3.1.1
1g5h_A_247 - HA => SUBCLASS : 5.1.5

Loops in ArchDB-EC clusters

1g5h_D_138 - HE => SUBCLASS : 2.5.5

Loops not clustered in ArchDB

1g5h_D_303 - AR
1g5h_D_99 - AR
1g5h_D_342 - AR
1g5h_A_303 - AR
1g5h_A_345 - AR
1g5h_A_107 - EH
1g5h_A_270 - EH
1g5h_A_308 - EH
1g5h_A_357 - EH
1g5h_A_387 - EH
1g5h_A_413 - EH
1g5h_A_428 - EH
1g5h_D_308 - EH
1g5h_D_357 - EH
1g5h_D_107 - EH
1g5h_D_387 - EH
1g5h_D_413 - EH
1g5h_D_428 - EH
1g5h_D_270 - EH
1g5h_D_154 - EH
1g5h_D_205 - EH
1g5h_A_180 - HA
1g5h_D_180 - HA
1g5h_D_247 - HA
1g5h_D_259 - HA
1g5h_D_298 - HA
1g5h_D_327 - HA
1g5h_A_327 - HA
1g5h_A_283 - HE
1g5h_A_316 - HE
1g5h_D_283 - HE
1g5h_A_219 - HE
1g5h_A_167 - HE
1g5h_A_75 - HE
1g5h_D_419 - HE
1g5h_D_399 - HE
1g5h_D_366 - HE
1g5h_D_316 - HE
1g5h_D_160 - HE
1g5h_D_75 - HE
1g5h_A_399 - HE
1g5h_D_222 - HE
1g5h_D_42 - HH
1g5h_D_124 - HH
1g5h_A_160 - HH
1g5h_A_124 - HH
1g5h_A_62 - HH
1g5h_A_42 - HH
1g5h_D_62 - HH

1g5h A - percentage of sequence identity: 100
1g5h B - percentage of sequence identity: 100
1g5h C - percentage of sequence identity: 100
1g5h D - percentage of sequence identity: 100
1g5i A - percentage of sequence identity: 100
1g5i B - percentage of sequence identity: 100
1g5i C - percentage of sequence identity: 100
1g5i D - percentage of sequence identity: 100