PDB: 1gd8 Compound: 50s ribosomal protein l17 Classification: RIBOSOME Entry date in PDB: 2001-09-22 Resolution [Å]: 2.30 R-Factor: 0.210

CHAIN: A SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: B SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: C SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: D SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: E SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: F SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: G SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: H SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis    CHAIN: I SWISS-PROT/TREMBL: Q9Z9H5    KEYWORD: 3D-structure    Ribosomal protein    SCOP: d.188.1.1 Alpha and beta proteins (a+b)    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Prokaryotic ribosomal protein L17    Thermus thermophilus GO:  intracellular    ribosome    structural constituent of ribosome    protein biosynthesis

Image Source: PDB

Loops in ArchDB95 clusters

1gd8_A_60 - HH => SUBCLASS : 3.9.4

Loops not clustered in ArchDB

1gd8_A_33 - EH
1gd8_A_95 - HA
1gd8_A_15 - HE
1gd8_A_83 - HE
1gd8_A_38 - HH
1gd8_A_73 - HH

1gd8 A - percentage of sequence identity: 100
1gd8 B - percentage of sequence identity: 100
1gd8 C - percentage of sequence identity: 100
1gd8 D - percentage of sequence identity: 100
1gd8 E - percentage of sequence identity: 100
1gd8 F - percentage of sequence identity: 100
1gd8 G - percentage of sequence identity: 100
1gd8 H - percentage of sequence identity: 100
1gd8 I - percentage of sequence identity: 100
1nkw L - percentage of sequence identity: 61
1nwx L - percentage of sequence identity: 61
1nwy L - percentage of sequence identity: 61
1pnu L - percentage of sequence identity: 60
1pny L - percentage of sequence identity: 60
1sm1 L - percentage of sequence identity: 61
1vor O - percentage of sequence identity: 60
1vou O - percentage of sequence identity: 60
1vow O - percentage of sequence identity: 60
1voy O - percentage of sequence identity: 60
1vp0 O - percentage of sequence identity: 60
1xbp L - percentage of sequence identity: 61
1yl3 0 - percentage of sequence identity: 100
2b66 R - percentage of sequence identity: 100
2b9n R - percentage of sequence identity: 100
2b9p R - percentage of sequence identity: 100