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Information on 1gk8
PDB: 1gk8
Compound: ribulose-1,5 bisphosphate carboxylase large chain
Classification: LYASE
Entry date in PDB: 2001-10-24
Resolution [Å]: 1.40
R-Factor: 0.149


CHAIN: A


CHAIN: C


CHAIN: E


CHAIN: G


CHAIN: I
SWISS-PROT/TREMBL: P00873
   KEYWORD: 3D-structure    Carbon dioxide fixation    Chloroplast    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    Transit peptide   
EC: 4.1.1.39
SCOP: d.73.1.1 Alpha and beta proteins (a+b)    RuBisCO, small subunit    RuBisCO, small subunit    RuBisCO, small subunit    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Chlamydomonas reinhardtii
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide   


CHAIN: K
SWISS-PROT/TREMBL: P00873
   KEYWORD: 3D-structure    Carbon dioxide fixation    Chloroplast    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    Transit peptide   
EC: 4.1.1.39
SCOP: d.73.1.1 Alpha and beta proteins (a+b)    RuBisCO, small subunit    RuBisCO, small subunit    RuBisCO, small subunit    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Chlamydomonas reinhardtii
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide   


CHAIN: M
SWISS-PROT/TREMBL: P00873
   KEYWORD: 3D-structure    Carbon dioxide fixation    Chloroplast    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    Transit peptide   
EC: 4.1.1.39
SCOP: d.73.1.1 Alpha and beta proteins (a+b)    RuBisCO, small subunit    RuBisCO, small subunit    RuBisCO, small subunit    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Chlamydomonas reinhardtii
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide   


CHAIN: O
SWISS-PROT/TREMBL: P00873
   KEYWORD: 3D-structure    Carbon dioxide fixation    Chloroplast    Lyase    Monooxygenase    Multigene family    Oxidoreductase    Photorespiration    Photosynthesis    Transit peptide   
EC: 4.1.1.39
SCOP: d.73.1.1 Alpha and beta proteins (a+b)    RuBisCO, small subunit    RuBisCO, small subunit    RuBisCO, small subunit    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Chlamydomonas reinhardtii
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide   
1gk8 Image
Image Source: PDB

Stored Loops of 1gk8

Loops in ArchDB40 clusters

1gk8_I_23 - HE => SUBCLASS : 1.1.1
1gk8_I_86 - HE => SUBCLASS : 4.1.1
1gk8_I_104 - HA => SUBCLASS : 4.1.2
1gk8_A_83 - HA => SUBCLASS : 7.13.1
1gk8_A_399 - EH => SUBCLASS : 0.1.72
1gk8_A_308 - EH => SUBCLASS : 1.1.9
1gk8_A_130 - EH => SUBCLASS : 1.1.21
1gk8_A_375 - EH => SUBCLASS : 4.48.1
1gk8_A_37 - EH => SUBCLASS : 5.22.1
1gk8_A_437 - HH => SUBCLASS : 1.2.1
1gk8_A_269 - HH => SUBCLASS : 1.4.1
1gk8_A_413 - HH => SUBCLASS : 3.3.1

Loops in ArchDB95 clusters

1gk8_A_399 - EH => SUBCLASS : 0.1.67
1gk8_A_308 - EH => SUBCLASS : 1.1.13
1gk8_A_130 - EH => SUBCLASS : 1.1.16
1gk8_A_375 - EH => SUBCLASS : 4.46.1
1gk8_A_37 - EH => SUBCLASS : 5.9.1
1gk8_I_74 - EH => SUBCLASS : 9.13.1
1gk8_A_437 - HH => SUBCLASS : 1.2.1
1gk8_A_269 - HH => SUBCLASS : 1.4.1
1gk8_A_50 - HH => SUBCLASS : 13.4.1
1gk8_I_23 - HE => SUBCLASS : 1.1.1
1gk8_I_86 - HE => SUBCLASS : 3.4.3
1gk8_I_86 - HE => SUBCLASS : 5.6.1
1gk8_I_104 - HA => SUBCLASS : 4.1.2
1gk8_A_83 - HA => SUBCLASS : 5.27.1
1gk8_A_83 - HA => SUBCLASS : 7.22.1

Loops in ArchDB-EC clusters

1gk8_A_413 - HH => SUBCLASS : 3.2.1

Loops not clustered in ArchDB

1gk8_A_366 - AR
1gk8_A_366 - AR
1gk8_A_97 - EH
1gk8_A_325 - EH
1gk8_A_290 - EH
1gk8_A_264 - EH
1gk8_A_240 - EH
1gk8_A_169 - EH
1gk8_I_39 - HA
1gk8_A_353 - HA
1gk8_A_83 - HA
1gk8_I_39 - HA
1gk8_A_353 - HA
1gk8_I_104 - HA
1gk8_A_298 - HE
1gk8_A_21 - HE
1gk8_A_77 - HE
1gk8_A_113 - HE
1gk8_A_155 - HE
1gk8_A_214 - HE
1gk8_A_247 - HE
1gk8_A_274 - HE
1gk8_A_387 - HE
1gk8_A_339 - HE
1gk8_A_311 - HE
1gk8_A_404 - HH
1gk8_A_182 - HH
1gk8_A_142 - HH

Homologous structures to 1gk8 classified in ArchDB

1gk8 I - percentage of sequence identity: 100
1gk8 K - percentage of sequence identity: 100
1gk8 M - percentage of sequence identity: 100
1gk8 O - percentage of sequence identity: 100
1ir2 1 - percentage of sequence identity: 97
1ir2 2 - percentage of sequence identity: 97
1ir2 3 - percentage of sequence identity: 97
1ir2 4 - percentage of sequence identity: 97
1ir2 5 - percentage of sequence identity: 97
1ir2 6 - percentage of sequence identity: 97
1ir2 7 - percentage of sequence identity: 97
1ir2 8 - percentage of sequence identity: 97
1ir2 I - percentage of sequence identity: 97
1ir2 J - percentage of sequence identity: 97
1ir2 K - percentage of sequence identity: 97
1ir2 L - percentage of sequence identity: 97
1ir2 M - percentage of sequence identity: 97
1ir2 N - percentage of sequence identity: 97
1ir2 O - percentage of sequence identity: 97
1ir2 P - percentage of sequence identity: 97
1rbl A - percentage of sequence identity: 82
1uw9 C - percentage of sequence identity: 98
1uw9 F - percentage of sequence identity: 98
1uw9 I - percentage of sequence identity: 98
1uw9 J - percentage of sequence identity: 98
1uw9 M - percentage of sequence identity: 98
1uw9 P - percentage of sequence identity: 98
1uw9 T - percentage of sequence identity: 98
1uw9 W - percentage of sequence identity: 98
1uwa C - percentage of sequence identity: 98
1uwa F - percentage of sequence identity: 98
1uwa I - percentage of sequence identity: 98
1uwa J - percentage of sequence identity: 98
1uwa M - percentage of sequence identity: 98
1uwa P - percentage of sequence identity: 98
1uwa T - percentage of sequence identity: 98
1uwa W - percentage of sequence identity: 98
1uzd C - percentage of sequence identity: 87
1uzd F - percentage of sequence identity: 87
1uzd I - percentage of sequence identity: 87
1uzd J - percentage of sequence identity: 87
1uzd M - percentage of sequence identity: 87
1uzd P - percentage of sequence identity: 87
1uzd T - percentage of sequence identity: 87
1uzd W - percentage of sequence identity: 87
1uzh C - percentage of sequence identity: 82
1uzh F - percentage of sequence identity: 82
1uzh I - percentage of sequence identity: 82
1uzh J - percentage of sequence identity: 82
1uzh M - percentage of sequence identity: 82
1uzh P - percentage of sequence identity: 82
1uzh T - percentage of sequence identity: 82
1uzh W - percentage of sequence identity: 82
8ruc A - percentage of sequence identity: 87