PDB: 1gmy Compound: cathepsin b Classification: COMPLEX (HYDROLASE/INHIBITOR) Entry date in PDB: 2002-09-19 Resolution [Å]: 1.90 R-Factor: 0.161

CHAIN: A SWISS-PROT/TREMBL: P07858    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Lysosome    Polymorphism    Signal    Thiol protease    Zymogen    EC: 3.4.22.1 SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    (Pro)cathepsin B    Human (Homo sapiens) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis    CHAIN: B SWISS-PROT/TREMBL: P07858    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Lysosome    Polymorphism    Signal    Thiol protease    Zymogen    EC: 3.4.22.1 SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    (Pro)cathepsin B    Human (Homo sapiens) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis    CHAIN: C SWISS-PROT/TREMBL: P07858    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Lysosome    Polymorphism    Signal    Thiol protease    Zymogen    EC: 3.4.22.1 SCOP: d.3.1.1 Alpha and beta proteins (a+b)    Cysteine proteinases    Cysteine proteinases    Papain-like    (Pro)cathepsin B    Human (Homo sapiens) GO:  cysteine-type endopeptidase activity    cysteine-type peptidase activity    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB-EC clusters

1gmy_A_212 - HA => SUBCLASS : 11.1.1

Loops not clustered in ArchDB

1gmy_A_230 - AR
1gmy_A_187 - AR
1gmy_A_170 - AR
1gmy_A_5 - EH
1gmy_A_151 - EH
1gmy_A_195 - HA
1gmy_A_157 - HE
1gmy_A_140 - HE
1gmy_A_7 - HH
1gmy_A_29 - HH
1gmy_A_76 - HH
1gmy_A_56 - HH

1cpj A - percentage of sequence identity: 83
1cpj B - percentage of sequence identity: 83
1csb A - percentage of sequence identity: 100
1csb B - percentage of sequence identity: 100
1csb D - percentage of sequence identity: 100
1csb E - percentage of sequence identity: 100
1cte A - percentage of sequence identity: 83
1cte B - percentage of sequence identity: 83
1gmy A - percentage of sequence identity: 100
1gmy B - percentage of sequence identity: 100
1gmy C - percentage of sequence identity: 100
1huc A - percentage of sequence identity: 100
1huc B - percentage of sequence identity: 100
1huc C - percentage of sequence identity: 100
1huc D - percentage of sequence identity: 100
1ito A - percentage of sequence identity: 88
1mir A - percentage of sequence identity: 82
1mir B - percentage of sequence identity: 82
1pbh - - percentage of sequence identity: 100
1qdq A - percentage of sequence identity: 88
1sp4 A - percentage of sequence identity: 91
1sp4 B - percentage of sequence identity: 87
1the A - percentage of sequence identity: 83
1the B - percentage of sequence identity: 83
2dc6 A - percentage of sequence identity: 88
2dc7 A - percentage of sequence identity: 88
2dc8 A - percentage of sequence identity: 88
2dc9 A - percentage of sequence identity: 88
2dca A - percentage of sequence identity: 88
2dcb A - percentage of sequence identity: 88
2dcc A - percentage of sequence identity: 88
2dcd A - percentage of sequence identity: 88
2pbh - - percentage of sequence identity: 100
3pbh - - percentage of sequence identity: 100