PDB: 1go3 Compound: DNA-directed RNA polymerase subunit e Classification: TRANSFERASE Entry date in PDB: 2001-12-07 Resolution [Å]: 1.75 R-Factor: 0.217

CHAIN: E SWISS-PROT/TREMBL: Q57840    KEYWORD: 3D-structure    Complete proteome    DNA-directed RNA polymerase    Transcription    Transferase    EC: 2.7.7.6 SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    C-terminal domain of RNA polymerase II subunit RBP4 (RpoE)    Archaeon Methanococcus jannaschii SCOP: d.230.1.1 Alpha and beta proteins (a+b)    Dodecin subunit-like    N-terminal, heterodimerisation domain of RBP4 (RpoE)    N-terminal, heterodimerisation domain of RBP4 (RpoE)    N-terminal, heterodimerisation domain of RBP4 (RpoE)    Archaeon Methanococcus jannaschii GO:  nucleus    DNA binding    DNA-directed RNA polymerase activity    RNA binding    transcription    CHAIN: F SWISS-PROT/TREMBL: Q60351    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    SCOP: a.60.8.2 All alpha proteins    SAM domain-like    HRDC-like    RNA polymerase II subunit RBP7 (RpoF)    RNA polymerase II subunit RBP7 (RpoF)    Archaeon Methanococcus jannaschii GO:  DNA-directed RNA polymerase activity    transcription    CHAIN: M SWISS-PROT/TREMBL: Q57840    KEYWORD: 3D-structure    Complete proteome    DNA-directed RNA polymerase    Transcription    Transferase    EC: 2.7.7.6 SCOP: b.40.4.5 All beta proteins    OB-fold    Nucleic acid-binding proteins    Cold shock DNA-binding domain-like    C-terminal domain of RNA polymerase II subunit RBP4 (RpoE)    Archaeon Methanococcus jannaschii SCOP: d.230.1.1 Alpha and beta proteins (a+b)    Dodecin subunit-like    N-terminal, heterodimerisation domain of RBP4 (RpoE)    N-terminal, heterodimerisation domain of RBP4 (RpoE)    N-terminal, heterodimerisation domain of RBP4 (RpoE)    Archaeon Methanococcus jannaschii GO:  nucleus    DNA binding    DNA-directed RNA polymerase activity    RNA binding    transcription    CHAIN: N SWISS-PROT/TREMBL: Q60351    KEYWORD: 3D-structure    Complete proteome    Hypothetical protein    SCOP: a.60.8.2 All alpha proteins    SAM domain-like    HRDC-like    RNA polymerase II subunit RBP7 (RpoF)    RNA polymerase II subunit RBP7 (RpoF)    Archaeon Methanococcus jannaschii GO:  DNA-directed RNA polymerase activity    transcription

Image Source: PDB

Loops in ArchDB40 clusters

1go3_E_84 - HA => SUBCLASS : 2.2.17
1go3_E_127 - HA => SUBCLASS : 4.1.2
1go3_E_135 - AR => SUBCLASS : 3.3.6
1go3_E_135 - AR => SUBCLASS : 3.3.9
1go3_F_49 - HH => SUBCLASS : 3.3.1

Loops in ArchDB95 clusters

1go3_F_49 - HH => SUBCLASS : 3.2.1
1go3_E_84 - HA => SUBCLASS : 2.2.40
1go3_E_127 - HA => SUBCLASS : 4.1.2

Loops in ArchDB-EC clusters

1go3_E_22 - HE => SUBCLASS : 3.9.3

Loops not clustered in ArchDB

1go3_E_160 - AR
1go3_E_135 - AR
1go3_E_105 - AR
1go3_E_66 - AR
1go3_E_66 - AR
1go3_E_105 - AR
1go3_E_160 - AR
1go3_E_2 - EH
1go3_E_171 - EH
1go3_E_141 - HA
1go3_E_141 - HA
1go3_E_127 - HA
1go3_E_118 - HA
1go3_E_38 - HA
1go3_E_96 - HA
1go3_E_84 - HA
1go3_E_43 - HA
1go3_E_43 - HA
1go3_E_38 - HA
1go3_E_96 - HA
1go3_E_118 - HA
1go3_F_80 - HH
1go3_F_32 - HH
1go3_F_14 - HH
1go3_F_66 - HH

1go3 E - percentage of sequence identity: 100
1go3 M - percentage of sequence identity: 100
null nu - percentage of sequence identity: 0