PDB: 1gpu Compound: transketolase Classification: TRANSFERASE(KETONE RESIDUES) Entry date in PDB: 2002-02-11 Resolution [Å]: 1.86 R-Factor: 0.198

CHAIN: A SWISS-PROT/TREMBL: P23254    KEYWORD: 3D-structure    Calcium-binding    Multigene family    Thiamine pyrophosphate    Transferase    EC: 2.2.1.1 SCOP: c.36.1.6 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    TK-like Pyr module    Transketolase (TK), Pyr module    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.36.1.10 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    TK-like PP module    Transketolase (TK), PP module    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.48.1.1 Alpha and beta proteins (a/b)    TK C-terminal domain-like    TK C-terminal domain-like    Transketolase C-terminal domain-like    Transketolase (TK), C-domain    Baker's yeast (Saccharomyces cerevisiae) GO:  transketolase activity    CHAIN: B SWISS-PROT/TREMBL: P23254    KEYWORD: 3D-structure    Calcium-binding    Multigene family    Thiamine pyrophosphate    Transferase    EC: 2.2.1.1 SCOP: c.36.1.6 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    TK-like Pyr module    Transketolase (TK), Pyr module    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.36.1.10 Alpha and beta proteins (a/b)    Thiamin diphosphate-binding fold (THDP-binding)    Thiamin diphosphate-binding fold (THDP-binding)    TK-like PP module    Transketolase (TK), PP module    Baker's yeast (Saccharomyces cerevisiae) SCOP: c.48.1.1 Alpha and beta proteins (a/b)    TK C-terminal domain-like    TK C-terminal domain-like    Transketolase C-terminal domain-like    Transketolase (TK), C-domain    Baker's yeast (Saccharomyces cerevisiae) GO:  transketolase activity

Image Source: PDB

Loops in ArchDB40 clusters

1gpu_A_189 - HA => SUBCLASS : 2.2.2
1gpu_A_436 - EH => SUBCLASS : 0.1.28
1gpu_A_557 - EH => SUBCLASS : 1.2.6
1gpu_A_583 - EH => SUBCLASS : 3.7.1
1gpu_A_62 - EH => SUBCLASS : 3.7.2
1gpu_A_497 - EH => SUBCLASS : 4.15.2
1gpu_A_180 - AR => SUBCLASS : 1.2.4
1gpu_A_157 - HH => SUBCLASS : 1.1.1
1gpu_A_157 - HH => SUBCLASS : 1.1.2
1gpu_A_302 - HH => SUBCLASS : 1.2.1
1gpu_A_591 - HH => SUBCLASS : 2.1.1

Loops in ArchDB95 clusters

1gpu_A_436 - EH => SUBCLASS : 0.1.35
1gpu_A_557 - EH => SUBCLASS : 1.3.10
1gpu_A_62 - EH => SUBCLASS : 2.1.15
1gpu_A_62 - EH => SUBCLASS : 2.3.5
1gpu_A_497 - EH => SUBCLASS : 3.3.11
1gpu_A_411 - EH => SUBCLASS : 4.76.1
1gpu_A_193 - EH => SUBCLASS : 8.33.1
1gpu_A_464 - EH => SUBCLASS : 15.3.1
1gpu_A_180 - AR => SUBCLASS : 2.8.1
1gpu_A_157 - HH => SUBCLASS : 1.1.2
1gpu_A_591 - HH => SUBCLASS : 2.1.1
1gpu_A_591 - HH => SUBCLASS : 2.3.1
1gpu_A_642 - HH => SUBCLASS : 3.28.1
1gpu_A_203 - HE => SUBCLASS : 1.1.1
1gpu_A_564 - HE => SUBCLASS : 2.1.1
1gpu_A_504 - HE => SUBCLASS : 3.4.1
1gpu_A_504 - HE => SUBCLASS : 3.4.2
1gpu_A_224 - HE => SUBCLASS : 3.4.3
1gpu_A_358 - HE => SUBCLASS : 3.4.14
1gpu_A_486 - HE => SUBCLASS : 3.7.1
1gpu_A_486 - HE => SUBCLASS : 3.7.2
1gpu_A_163 - HE => SUBCLASS : 4.7.1
1gpu_A_450 - HE => SUBCLASS : 4.48.1
1gpu_A_504 - HE => SUBCLASS : 5.14.1
1gpu_A_189 - HA => SUBCLASS : 2.2.2

Loops in ArchDB-EC clusters

1gpu_A_642 - HH => SUBCLASS : 3.15.1

Loops not clustered in ArchDB

1gpu_A_405 - AR
1gpu_A_405 - AR
1gpu_A_547 - AR
1gpu_A_180 - AR
1gpu_A_547 - AR
1gpu_A_151 - EH
1gpu_A_629 - EH
1gpu_A_522 - EH
1gpu_A_376 - EH
1gpu_A_242 - EH
1gpu_A_213 - EH
1gpu_A_396 - HA
1gpu_A_189 - HA
1gpu_A_612 - HA
1gpu_A_396 - HA
1gpu_A_612 - HA
1gpu_A_599 - HE
1gpu_A_32 - HE
1gpu_A_120 - HE
1gpu_A_384 - HE
1gpu_A_418 - HE
1gpu_A_539 - HE
1gpu_A_269 - HH
1gpu_A_6 - HH
1gpu_A_71 - HH
1gpu_A_443 - HH
1gpu_A_324 - HH
1gpu_A_291 - HH
1gpu_A_87 - HH

1ay0 A - percentage of sequence identity: 99
1ay0 B - percentage of sequence identity: 99
1gpu A - percentage of sequence identity: 100
1gpu B - percentage of sequence identity: 100
1ngs A - percentage of sequence identity: 100
1ngs B - percentage of sequence identity: 100
1tka A - percentage of sequence identity: 100
1tka B - percentage of sequence identity: 100
1tkb A - percentage of sequence identity: 100
1tkb B - percentage of sequence identity: 100
1tkc A - percentage of sequence identity: 100
1tkc B - percentage of sequence identity: 100
1trk A - percentage of sequence identity: 100
1trk B - percentage of sequence identity: 100