PDB: 1gv1 Compound: malate dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2002-02-20 Resolution [Å]: 2.50 R-Factor: 0.216

CHAIN: A SWISS-PROT/TREMBL: P80038    KEYWORD: NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Chlorobium vibrioforme SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Chlorobium vibrioforme GO:  L-lactate dehydrogenase activity    L-malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism    CHAIN: B SWISS-PROT/TREMBL: P80039    KEYWORD: 3D-structure    Complete proteome    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Chlorobium vibrioforme SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Chlorobium vibrioforme GO:  L-lactate dehydrogenase activity    L-malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism    CHAIN: C SWISS-PROT/TREMBL: P80038    KEYWORD: NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Chlorobium vibrioforme SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Chlorobium vibrioforme GO:  L-lactate dehydrogenase activity    L-malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism    CHAIN: D SWISS-PROT/TREMBL: P80039    KEYWORD: 3D-structure    Complete proteome    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Chlorobium vibrioforme SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Chlorobium vibrioforme GO:  L-lactate dehydrogenase activity    L-malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1gv1_A_10 - HE => SUBCLASS : 4.2.3
1gv1_A_144 - HE => SUBCLASS : 6.1.1
1gv1_A_121 - HE => SUBCLASS : 6.4.1
1gv1_A_260 - HA => SUBCLASS : 2.2.15
1gv1_A_245 - HA => SUBCLASS : 4.30.1
1gv1_A_2 - EH => SUBCLASS : 3.2.1
1gv1_A_113 - EH => SUBCLASS : 4.28.1
1gv1_A_178 - AR => SUBCLASS : 5.2.1
1gv1_A_57 - AR => SUBCLASS : 10.3.1

Loops in ArchDB95 clusters

1gv1_A_139 - EH => SUBCLASS : 2.11.1
1gv1_A_274 - EH => SUBCLASS : 3.7.6
1gv1_A_113 - EH => SUBCLASS : 4.17.1
1gv1_A_178 - AR => SUBCLASS : 3.2.1
1gv1_A_57 - AR => SUBCLASS : 10.1.1
1gv1_A_87 - HE => SUBCLASS : 4.1.8
1gv1_A_10 - HE => SUBCLASS : 4.2.2
1gv1_A_10 - HE => SUBCLASS : 4.2.5
1gv1_A_144 - HE => SUBCLASS : 6.1.1
1gv1_A_245 - HA => SUBCLASS : 4.35.1

Loops in ArchDB-EC clusters

1gv1_A_144 - HE => SUBCLASS : 6.2.1

Loops not clustered in ArchDB

1gv1_A_57 - AR
1gv1_A_166 - AR
1gv1_A_166 - AR
1gv1_A_178 - AR
1gv1_A_190 - EH
1gv1_A_72 - EH
1gv1_A_27 - EH
1gv1_A_186 - HA
1gv1_A_245 - HA
1gv1_A_170 - HA
1gv1_A_186 - HA
1gv1_A_170 - HA
1gv1_A_260 - HA
1gv1_A_226 - HE
1gv1_A_49 - HE
1gv1_A_211 - HH
1gv1_A_198 - HH
1gv1_A_37 - HH

1guz A - percentage of sequence identity: 97
1guz B - percentage of sequence identity: 97
1guz C - percentage of sequence identity: 97
1guz D - percentage of sequence identity: 97
1gv0 A - percentage of sequence identity: 86
1gv0 B - percentage of sequence identity: 86
1gv1 A - percentage of sequence identity: 100
1gv1 B - percentage of sequence identity: 100
1gv1 C - percentage of sequence identity: 100
1gv1 D - percentage of sequence identity: 100