PDB: 1gv4 Compound: programed cell death protein 8 Classification: OXIDOREDUCTASE Entry date in PDB: 2002-04-26 Resolution [Å]: 2.00 R-Factor: 0.218

CHAIN: A SWISS-PROT/TREMBL: Q9Z0X1    KEYWORD: 3D-structure    Apoptosis    FAD    Flavoprotein    Mitochondrion    Nuclear protein    Oxidoreductase    Transit peptide    3D-structure    Apoptosis    FAD    Flavoprotein    Mitochondrion    Nuclear protein    Oxidoreductase    Transit peptide    EC: 1.-.-.- SCOP: c.3.1.5 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    FAD/NAD-linked reductases, N-terminal and central domains    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) SCOP: c.3.1.5 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    FAD/NAD-linked reductases, N-terminal and central domains    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) SCOP: c.3.1.5 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    FAD/NAD-linked reductases, N-terminal and central domains    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) SCOP: d.87.1.1 Alpha and beta proteins (a+b)    CO dehydrogenase flavoprotein C-domain-like    FAD/NAD-linked reductases, dimerisation (C-terminal) domain    FAD/NAD-linked reductases, dimerisation (C-terminal) domain    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) GO:  disulfide oxidoreductase activity    oxidoreductase activity    electron transport    CHAIN: B SWISS-PROT/TREMBL: Q9Z0X1    KEYWORD: 3D-structure    Apoptosis    FAD    Flavoprotein    Mitochondrion    Nuclear protein    Oxidoreductase    Transit peptide    3D-structure    Apoptosis    FAD    Flavoprotein    Mitochondrion    Nuclear protein    Oxidoreductase    Transit peptide    EC: 1.-.-.- SCOP: c.3.1.5 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    FAD/NAD-linked reductases, N-terminal and central domains    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) SCOP: c.3.1.5 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    FAD/NAD-linked reductases, N-terminal and central domains    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) SCOP: c.3.1.5 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    FAD/NAD-linked reductases, N-terminal and central domains    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) SCOP: d.87.1.1 Alpha and beta proteins (a+b)    CO dehydrogenase flavoprotein C-domain-like    FAD/NAD-linked reductases, dimerisation (C-terminal) domain    FAD/NAD-linked reductases, dimerisation (C-terminal) domain    Apoptosis-inducing factor (AIF)    Mouse (Mus musculus) GO:  disulfide oxidoreductase activity    oxidoreductase activity    electron transport

Image Source: PDB

Loops in ArchDB95 clusters

1gv4_A_328 - EH => SUBCLASS : 11.6.1
1gv4_A_223 - AR => SUBCLASS : 2.6.1
1gv4_A_420 - AR => SUBCLASS : 4.13.3
1gv4_A_274 - HE => SUBCLASS : 0.1.18
1gv4_A_345 - HE => SUBCLASS : 1.1.1
1gv4_A_345 - HE => SUBCLASS : 1.1.2
1gv4_A_309 - HE => SUBCLASS : 2.1.1
1gv4_A_286 - HE => SUBCLASS : 2.2.8
1gv4_A_561 - HA => SUBCLASS : 2.1.2
1gv4_A_191 - HA => SUBCLASS : 3.1.1
1gv4_A_232 - HA => SUBCLASS : 4.1.1
1gv4_A_561 - HA => SUBCLASS : 6.24.1

Loops in ArchDB-EC clusters

1gv4_A_345 - HE => SUBCLASS : 2.6.2

Loops not clustered in ArchDB

1gv4_A_490 - AR
1gv4_A_392 - AR
1gv4_A_249 - AR
1gv4_A_361 - AR
1gv4_A_387 - AR
1gv4_A_432 - AR
1gv4_A_490 - AR
1gv4_A_199 - AR
1gv4_A_223 - AR
1gv4_A_420 - AR
1gv4_A_249 - AR
1gv4_A_361 - AR
1gv4_A_387 - AR
1gv4_A_392 - AR
1gv4_A_432 - AR
1gv4_A_199 - AR
1gv4_A_447 - EH
1gv4_A_503 - EH
1gv4_A_572 - EH
1gv4_A_399 - EH
1gv4_A_301 - EH
1gv4_A_280 - EH
1gv4_A_261 - EH
1gv4_A_129 - EH
1gv4_A_157 - EH
1gv4_A_241 - HA
1gv4_A_241 - HA
1gv4_A_480 - HA
1gv4_A_439 - HA
1gv4_A_368 - HA
1gv4_A_377 - HA
1gv4_A_427 - HA
1gv4_A_232 - HA
1gv4_A_561 - HA
1gv4_A_191 - HA
1gv4_A_480 - HA
1gv4_A_439 - HA
1gv4_A_368 - HA
1gv4_A_427 - HA
1gv4_A_377 - HA
1gv4_A_528 - HE
1gv4_A_454 - HE
1gv4_A_405 - HE
1gv4_A_186 - HE
1gv4_A_140 - HE
1gv4_A_267 - HH
1gv4_A_516 - HH
1gv4_A_584 - HH

1e1h A - percentage of sequence identity: 97
1e1h C - percentage of sequence identity: 97
1gv4 A - percentage of sequence identity: 100
1gv4 B - percentage of sequence identity: 100
1ik6 A - percentage of sequence identity: 93
1m6i A - percentage of sequence identity: 95
1n0h A - percentage of sequence identity: 80
1n0h B - percentage of sequence identity: 80
1nkt A - percentage of sequence identity: 95
1nkt B - percentage of sequence identity: 95
1nl3 A - percentage of sequence identity: 95
1nl3 B - percentage of sequence identity: 95
1ou5 A - percentage of sequence identity: 97
1ou5 B - percentage of sequence identity: 97
1t9a A - percentage of sequence identity: 80
1t9a B - percentage of sequence identity: 80
1t9b A - percentage of sequence identity: 80
1t9b B - percentage of sequence identity: 80
1t9c A - percentage of sequence identity: 80
1t9c B - percentage of sequence identity: 80
1t9d A - percentage of sequence identity: 80
1t9d B - percentage of sequence identity: 80
1t9d C - percentage of sequence identity: 80
1t9d D - percentage of sequence identity: 80
1u34 A - percentage of sequence identity: 100
1z9m A - percentage of sequence identity: 100
1z9m B - percentage of sequence identity: 100
2akj A - percentage of sequence identity: 97