PDB: 1hk9 Compound: hfq protein Classification: RNA-BINDING PROTEIN Entry date in PDB: 2003-07-24 Resolution [Å]: 2.15 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P25521    KEYWORD: 3D-structure    Complete proteome    DNA-binding    RNA-binding    SCOP: b.38.1.2 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Pleiotropic translational regulator Hfq    Pleiotropic translational regulator Hfq    Escherichia coli GO:  nucleus    small nucleolar ribonucleoprotein complex    RNA binding    mRNA processing    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: P25521    KEYWORD: 3D-structure    Complete proteome    DNA-binding    RNA-binding    SCOP: b.38.1.2 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Pleiotropic translational regulator Hfq    Pleiotropic translational regulator Hfq    Escherichia coli GO:  nucleus    small nucleolar ribonucleoprotein complex    RNA binding    mRNA processing    regulation of transcription, DNA-dependent    CHAIN: C SWISS-PROT/TREMBL: P25521    KEYWORD: 3D-structure    Complete proteome    DNA-binding    RNA-binding    SCOP: b.38.1.2 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Pleiotropic translational regulator Hfq    Pleiotropic translational regulator Hfq    Escherichia coli GO:  nucleus    small nucleolar ribonucleoprotein complex    RNA binding    mRNA processing    regulation of transcription, DNA-dependent    CHAIN: D SWISS-PROT/TREMBL: P25521    KEYWORD: 3D-structure    Complete proteome    DNA-binding    RNA-binding    SCOP: b.38.1.2 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Pleiotropic translational regulator Hfq    Pleiotropic translational regulator Hfq    Escherichia coli GO:  nucleus    small nucleolar ribonucleoprotein complex    RNA binding    mRNA processing    regulation of transcription, DNA-dependent    CHAIN: E SWISS-PROT/TREMBL: P25521    KEYWORD: 3D-structure    Complete proteome    DNA-binding    RNA-binding    SCOP: b.38.1.2 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Pleiotropic translational regulator Hfq    Pleiotropic translational regulator Hfq    Escherichia coli GO:  nucleus    small nucleolar ribonucleoprotein complex    RNA binding    mRNA processing    regulation of transcription, DNA-dependent    CHAIN: F SWISS-PROT/TREMBL: P25521    KEYWORD: 3D-structure    Complete proteome    DNA-binding    RNA-binding    SCOP: b.38.1.2 All beta proteins    Sm-like fold    Sm-like ribonucleoproteins    Pleiotropic translational regulator Hfq    Pleiotropic translational regulator Hfq    Escherichia coli GO:  nucleus    small nucleolar ribonucleoprotein complex    RNA binding    mRNA processing    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB40 clusters

1hk9_A_31 - HA => SUBCLASS : 2.2.7
1hk9_A_22 - HA => SUBCLASS : 4.2.3

Loops in ArchDB95 clusters

1hk9_A_31 - HA => SUBCLASS : 2.2.3
1hk9_A_22 - HA => SUBCLASS : 4.3.3

Loops not clustered in ArchDB

1hk9_A_51 - AR
1hk9_A_43 - HA
1hk9_A_8 - HE

1hk9 A - percentage of sequence identity: 100
1hk9 B - percentage of sequence identity: 100
1hk9 C - percentage of sequence identity: 100
1hk9 D - percentage of sequence identity: 100
1hk9 E - percentage of sequence identity: 100
1hk9 F - percentage of sequence identity: 100
1u1s A - percentage of sequence identity: 92
1u1s B - percentage of sequence identity: 92
1u1s C - percentage of sequence identity: 92
1u1s D - percentage of sequence identity: 92
1u1s E - percentage of sequence identity: 92
1u1s F - percentage of sequence identity: 92
1u1t A - percentage of sequence identity: 92
1u1t B - percentage of sequence identity: 92
1u1t C - percentage of sequence identity: 92
1u1t D - percentage of sequence identity: 92
1u1t E - percentage of sequence identity: 92
1u1t F - percentage of sequence identity: 92