PDB: 1hxs Compound: genome polyprotein, coat protein vp1 Classification: VIRUS/VIRAL PROTEIN Entry date in PDB: 2002-01-16 Resolution [Å]: 2.20 R-Factor: 0.268

CHAIN: 3 SWISS-PROT/TREMBL: P03300    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Poliovirus coat proteins    Poliovirus type 1, strain Mahoney GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    nucleoside-triphosphatase activity    nucleotide binding    peptidase activity    picornain 3C activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle    CHAIN: 4 SWISS-PROT/TREMBL: P03300    KEYWORD: 3D-structure    Coat protein    Core protein    Hydrolase    Lipoprotein    Myristate    Polyprotein    RNA-directed RNA polymerase    Thiol protease    Transferase    EC: 2.7.7.48 SCOP: b.121.4.1 All beta proteins    Nucleoplasmin-like/VP (viral coat and capsid proteins)    Positive stranded ssRNA viruses    Picornaviridae-like VP (VP1, VP2, VP3 and VP4)    Poliovirus coat proteins    Poliovirus type 1, strain Mahoney GO:  viral capsid    ATP binding    cysteine-type endopeptidase activity    helicase activity    nucleoside-triphosphatase activity    nucleotide binding    peptidase activity    picornain 3C activity    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    structural molecule activity    proteolysis and peptidolysis    transcription    viral genome replication    viral life cycle

Image Source: PDB

Loops in ArchDB95 clusters

1hxs_1_106 - EH => SUBCLASS : 6.57.1
1hxs_3_129 - EH => SUBCLASS : 9.31.1
1hxs_3_107 - AR => SUBCLASS : 2.7.1
1hxs_3_207 - AR => SUBCLASS : 3.11.1
1hxs_2_195 - AR => SUBCLASS : 5.39.1
1hxs_2_69 - AR => SUBCLASS : 5.52.1
1hxs_3_152 - AR => SUBCLASS : 5.81.1
1hxs_3_163 - AR => SUBCLASS : 7.19.1
1hxs_2_32 - AR => SUBCLASS : 30.1.1
1hxs_3_145 - HE => SUBCLASS : 0.1.46
1hxs_3_99 - HE => SUBCLASS : 0.1.49
1hxs_3_145 - HE => SUBCLASS : 1.3.19
1hxs_3_43 - HE => SUBCLASS : 2.7.1
1hxs_2_14 - HA => SUBCLASS : 2.3.1

Loops not clustered in ArchDB

1hxs_1_85 - AR
1hxs_2_227 - AR
1hxs_2_205 - AR
1hxs_2_155 - AR
1hxs_2_98 - AR
1hxs_2_64 - AR
1hxs_2_21 - AR
1hxs_3_189 - AR
1hxs_3_177 - AR
1hxs_3_114 - AR
1hxs_3_70 - AR
1hxs_1_125 - AR
1hxs_1_182 - AR
1hxs_1_192 - AR
1hxs_1_205 - AR
1hxs_1_239 - AR
1hxs_3_51 - AR
1hxs_2_118 - EH
1hxs_2_78 - EH
1hxs_4_26 - EH
1hxs_3_83 - EH
1hxs_1_154 - HA
1hxs_4_4 - HA
1hxs_1_77 - HE
1hxs_1_117 - HE
1hxs_2_90 - HE
1hxs_2_145 - HE

1al2 1 - percentage of sequence identity: 98
1ar6 1 - percentage of sequence identity: 98
1ar7 1 - percentage of sequence identity: 98
1ar8 1 - percentage of sequence identity: 98
1ar9 1 - percentage of sequence identity: 98
1asj 1 - percentage of sequence identity: 98
1dgi 1 - percentage of sequence identity: 96
1eah 1 - percentage of sequence identity: 76
1nn8 1 - percentage of sequence identity: 100
1piv 1 - percentage of sequence identity: 78
1po1 1 - percentage of sequence identity: 98
1po2 1 - percentage of sequence identity: 98
1pov 1 - percentage of sequence identity: 98
1vba 1 - percentage of sequence identity: 78
1vbb 1 - percentage of sequence identity: 78
1vbc 1 - percentage of sequence identity: 78
1vbd 1 - percentage of sequence identity: 98
1vbe 1 - percentage of sequence identity: 78
1xyr 1 - percentage of sequence identity: 100
1z7s 1 - percentage of sequence identity: 61
1z7z 1 - percentage of sequence identity: 63
2plv 1 - percentage of sequence identity: 98
null nu - percentage of sequence identity: 0