ArchDB - Biological DataBase of Protein Loops

Information on 1i3r

PDB: 1i3r
Compound: h-2 class ii histocompatibility antigen, e-k alpha
Classification: IMMUNE SYSTEM
Entry date in PDB: 2001-06-20
Resolution [Å]: 2.40
R-Factor: 0.229

CHAIN: A

SWISS-PROT/TREMBL: P04224
   KEYWORD: Glycoprotein    MHC II    Signal    Transmembrane
SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-E group
SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-EK
GO:

CHAIN: B

SWISS-PROT/TREMBL: P02089
   KEYWORD: Erythrocyte    Heme    Oxygen transport    Polymorphism    Transport    Erythrocyte    Heme    Oxygen transport    Polymorphism    Transport
SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-E group
SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-EK
GO:

CHAIN: C

CHAIN: D

CHAIN: E

CHAIN: F

CHAIN: G

CHAIN: H

Image Source: PDB

Stored Loops of 1i3r

Loops in ArchDB95 clusters

1i3r_B_162 - AR => SUBCLASS : 1.2.9
1i3r_B_181 - AR => SUBCLASS : 4.52.1
1i3r_B_35 - HA => SUBCLASS : 4.19.1

Loops not clustered in ArchDB

1i3r_B_140 - AR
1i3r_B_168 - AR
1i3r_B_73 - EH
1i3r_B_49 - HA
1i3r_B_196 - HA
1i3r_B_174 - HA
1i3r_B_154 - HA
1i3r_B_124 - HA
1i3r_B_61 - HA
1i3r_B_105 - HE
1i3r_B_81 - HH
1i3r_B_91 - HH

Homologous structures to 1i3r classified in ArchDB

1a6a B - percentage of sequence identity: 78
1aqd B - percentage of sequence identity: 76
1aqd E - percentage of sequence identity: 76
1aqd H - percentage of sequence identity: 76
1aqd K - percentage of sequence identity: 76
1bx2 B - percentage of sequence identity: 76
1bx2 E - percentage of sequence identity: 76
1d5m B - percentage of sequence identity: 76
1d5x B - percentage of sequence identity: 77
1d5z B - percentage of sequence identity: 77
1d6e B - percentage of sequence identity: 77
1d9k D - percentage of sequence identity: 63
1d9k H - percentage of sequence identity: 63
1dlh B - percentage of sequence identity: 77
1dlh E - percentage of sequence identity: 77
1es0 B - percentage of sequence identity: 62
1f3j B - percentage of sequence identity: 63
1f3j E - percentage of sequence identity: 63
1fne B - percentage of sequence identity: 99
1fne D - percentage of sequence identity: 99
1fng A - percentage of sequence identity: 98
1fng B - percentage of sequence identity: 100
1fng D - percentage of sequence identity: 100
1fv1 B - percentage of sequence identity: 74
1fv1 E - percentage of sequence identity: 74
1fyt B - percentage of sequence identity: 76
1h15 B - percentage of sequence identity: 74
1h15 E - percentage of sequence identity: 74
1hqr B - percentage of sequence identity: 74
1hxy B - percentage of sequence identity: 77
1i3r B - percentage of sequence identity: 100
1i3r D - percentage of sequence identity: 100
1i3r F - percentage of sequence identity: 100
1i3r H - percentage of sequence identity: 100
1iak B - percentage of sequence identity: 64
1iao B - percentage of sequence identity: 64
1iea B - percentage of sequence identity: 100
1iea D - percentage of sequence identity: 100
1ieb B - percentage of sequence identity: 100
1ieb D - percentage of sequence identity: 100
1j8h B - percentage of sequence identity: 77
1jk8 B - percentage of sequence identity: 66
1jl4 B - percentage of sequence identity: 64
1jwm B - percentage of sequence identity: 77
1jws B - percentage of sequence identity: 77
1jwu B - percentage of sequence identity: 77
1k2d B - percentage of sequence identity: 64
1kg0 B - percentage of sequence identity: 77
1klg B - percentage of sequence identity: 77
1klu B - percentage of sequence identity: 77
1kt2 B - percentage of sequence identity: 100
1kt2 D - percentage of sequence identity: 100
1ktd B - percentage of sequence identity: 100
1ktd D - percentage of sequence identity: 100
1lnu B - percentage of sequence identity: 65
1lnu D - percentage of sequence identity: 67
1lnu F - percentage of sequence identity: 67
1lnu H - percentage of sequence identity: 67
1lo5 B - percentage of sequence identity: 77
1muj B - percentage of sequence identity: 66
1pyw B - percentage of sequence identity: 77
1r5i B - percentage of sequence identity: 77
1r5i F - percentage of sequence identity: 77
1r5v B - percentage of sequence identity: 99
1r5v D - percentage of sequence identity: 99
1r5w B - percentage of sequence identity: 99
1r5w D - percentage of sequence identity: 99
1s9v B - percentage of sequence identity: 66
1s9v E - percentage of sequence identity: 66
1seb B - percentage of sequence identity: 76
1seb F - percentage of sequence identity: 76
1sje B - percentage of sequence identity: 77
1sjh B - percentage of sequence identity: 77
1t5w B - percentage of sequence identity: 77
1t5w E - percentage of sequence identity: 77
1t5x B - percentage of sequence identity: 77
1u3h D - percentage of sequence identity: 64
1u3h H - percentage of sequence identity: 64
1uvq B - percentage of sequence identity: 68
1ymm B - percentage of sequence identity: 76
1zgl B - percentage of sequence identity: 75
1zgl E - percentage of sequence identity: 75
1zgl H - percentage of sequence identity: 75
1zgl K - percentage of sequence identity: 75
2iad B - percentage of sequence identity: 64
2seb B - percentage of sequence identity: 77