PDB: 1i5z Compound: catabolite gene activator protein Classification: DNA BINDING PROTEIN Entry date in PDB: 2003-06-17 Resolution [Å]: 1.90 R-Factor: 0.215

CHAIN: A SWISS-PROT/TREMBL: P03020    KEYWORD: 3D-structure    Activator    cAMP-binding    Complete proteome    DNA-binding    Transcription regulation    SCOP: a.4.5.4 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    CAP C-terminal domain-like    Catabolite gene activator protein (CAP), C-terminal domain    Escherichia coli SCOP: b.82.3.2 All beta proteins    Double-stranded beta-helix    cAMP-binding domain-like    cAMP-binding domain    Catabolite gene activator protein, N-terminal domain    Escherichia coli GO:  intracellular    intracellular    intracellular    intracellular    transcription factor activity    transcription factor activity    transcription factor activity    transcription factor activity    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: P03020    KEYWORD: 3D-structure    Activator    cAMP-binding    Complete proteome    DNA-binding    Transcription regulation    SCOP: a.4.5.4 All alpha proteins    DNA/RNA-binding 3-helical bundle    "Winged helix" DNA-binding domain    CAP C-terminal domain-like    Catabolite gene activator protein (CAP), C-terminal domain    Escherichia coli SCOP: b.82.3.2 All beta proteins    Double-stranded beta-helix    cAMP-binding domain-like    cAMP-binding domain    Catabolite gene activator protein, N-terminal domain    Escherichia coli GO:  intracellular    intracellular    intracellular    intracellular    transcription factor activity    transcription factor activity    transcription factor activity    transcription factor activity    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB40 clusters

1i5z_A_9 - HE => SUBCLASS : 0.1.11
1i5z_A_9 - HE => SUBCLASS : 0.1.18
1i5z_A_180 - HE => SUBCLASS : 2.4.1
1i5z_A_196 - HA => SUBCLASS : 2.3.1
1i5z_A_47 - HA => SUBCLASS : 3.1.1
1i5z_A_164 - EH => SUBCLASS : 1.1.5
1i5z_A_19 - AR => SUBCLASS : 3.1.1
1i5z_A_19 - AR => SUBCLASS : 3.1.3
1i5z_A_85 - AR => SUBCLASS : 3.2.6
1i5z_A_19 - AR => SUBCLASS : 3.3.1
1i5z_A_28 - AR => SUBCLASS : 4.1.3
1i5z_A_58 - AR => SUBCLASS : 4.4.1
1i5z_A_99 - HH => SUBCLASS : 1.2.3
1i5z_A_99 - HH => SUBCLASS : 1.2.11
1i5z_A_111 - HH => SUBCLASS : 2.1.3
1i5z_A_111 - HH => SUBCLASS : 2.1.7
1i5z_A_169 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1i5z_A_164 - EH => SUBCLASS : 1.1.3
1i5z_A_85 - AR => SUBCLASS : 1.2.7
1i5z_A_38 - AR => SUBCLASS : 1.3.1
1i5z_A_58 - AR => SUBCLASS : 2.3.1
1i5z_A_19 - AR => SUBCLASS : 2.3.1
1i5z_A_19 - AR => SUBCLASS : 3.3.3
1i5z_A_28 - AR => SUBCLASS : 4.1.2
1i5z_A_58 - AR => SUBCLASS : 4.2.7
1i5z_A_99 - HH => SUBCLASS : 1.2.2
1i5z_A_99 - HH => SUBCLASS : 1.2.6
1i5z_A_111 - HH => SUBCLASS : 2.1.1
1i5z_A_111 - HH => SUBCLASS : 2.3.1
1i5z_A_169 - HH => SUBCLASS : 3.1.1
1i5z_A_9 - HE => SUBCLASS : 0.1.14
1i5z_A_9 - HE => SUBCLASS : 1.3.9
1i5z_A_180 - HE => SUBCLASS : 2.4.1
1i5z_A_196 - HA => SUBCLASS : 2.3.1
1i5z_A_47 - HA => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1i5z_A_69 - AR
1i5z_A_92 - EH
1i5z_A_139 - HE

1cgp A - percentage of sequence identity: 100
1cgp B - percentage of sequence identity: 100
1g6n A - percentage of sequence identity: 100
1g6n B - percentage of sequence identity: 100
1hw5 A - percentage of sequence identity: 99
1hw5 B - percentage of sequence identity: 99
1i5z A - percentage of sequence identity: 100
1i5z B - percentage of sequence identity: 100
1i6x A - percentage of sequence identity: 99
1i6x B - percentage of sequence identity: 99
1j59 A - percentage of sequence identity: 100
1j59 B - percentage of sequence identity: 100
1lb2 A - percentage of sequence identity: 100
1o3q A - percentage of sequence identity: 100
1o3r A - percentage of sequence identity: 100
1o3s A - percentage of sequence identity: 99
1o3t A - percentage of sequence identity: 100
1o3t B - percentage of sequence identity: 100
1run A - percentage of sequence identity: 100
1run B - percentage of sequence identity: 100
1ruo A - percentage of sequence identity: 99
1ruo B - percentage of sequence identity: 99
2cgp A - percentage of sequence identity: 100