PDB: 1iak Compound: mhc class ii i-ak Classification: HISTOCOMPATIBILITY ANTIGEN I-AK Entry date in PDB: 1998-04-15 Resolution [Å]: 1.90 R-Factor: 0.214

CHAIN: A SWISS-PROT/TREMBL: P01910    KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Mouse (Mus musculus), I-A group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Mouse (Mus musculus), I-AK GO:  membrane    immune response    CHAIN: B SWISS-PROT/TREMBL: P06343    KEYWORD: 3D-structure    Glycoprotein    MHC II    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC beta chain, C-terminal domain    Mouse (Mus musculus), I-A group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC beta chain, N-terminal domain    Mouse (Mus musculus), I-AK GO:  membrane    immune response    CHAIN: P SWISS-PROT/TREMBL: P24364    KEYWORD: Bacteriolytic enzyme    Glycosidase    Hydrolase    EC: 3.2.1.17 GO:

Image Source: PDB

Loops in ArchDB95 clusters

1iak_A_40 - EH => SUBCLASS : 12.3.1
1iak_A_126 - AR => SUBCLASS : 3.14.1
1iak_B_136 - AR => SUBCLASS : 4.8.2
1iak_A_145 - AR => SUBCLASS : 4.12.4
1iak_A_56 - HE => SUBCLASS : 10.2.1
1iak_A_118 - HA => SUBCLASS : 2.1.1
1iak_B_128 - HA => SUBCLASS : 2.1.1
1iak_A_138 - HA => SUBCLASS : 3.1.1
1iak_A_29 - HA => SUBCLASS : 4.1.1
1iak_B_170 - HA => SUBCLASS : 4.4.1
1iak_A_161 - HA => SUBCLASS : 4.4.1
1iak_B_9 - HA => SUBCLASS : 4.19.1
1iak_A_88 - HA => SUBCLASS : 9.8.1
1iak_B_98 - HA => SUBCLASS : 9.12.1

Loops not clustered in ArchDB

1iak_B_142 - AR
1iak_A_103 - AR
1iak_A_132 - AR
1iak_B_155 - AR
1iak_B_113 - AR
1iak_B_47 - EH
1iak_B_148 - HA
1iak_A_7 - HA
1iak_B_35 - HA
1iak_B_23 - HA
1iak_A_19 - HA
1iak_B_79 - HE
1iak_B_55 - HH
1iak_B_68 - HH
1iak_B_74 - HH

1d5m B - percentage of sequence identity: 65
1d9k C - percentage of sequence identity: 100
1d9k G - percentage of sequence identity: 100
1es0 A - percentage of sequence identity: 92
1f3j A - percentage of sequence identity: 92
1f3j D - percentage of sequence identity: 92
1fv1 B - percentage of sequence identity: 65
1i3r B - percentage of sequence identity: 64
1iao A - percentage of sequence identity: 91
1jl4 A - percentage of sequence identity: 100
1ktd B - percentage of sequence identity: 64
1lnu A - percentage of sequence identity: 93
1lnu B - percentage of sequence identity: 90
1lnu C - percentage of sequence identity: 93
1lnu E - percentage of sequence identity: 93
1lnu G - percentage of sequence identity: 93
1s9v A - percentage of sequence identity: 70
1s9v B - percentage of sequence identity: 76
1s9v D - percentage of sequence identity: 70
1u3h C - percentage of sequence identity: 96
1u3h G - percentage of sequence identity: 96
1uvq A - percentage of sequence identity: 69
1uvq B - percentage of sequence identity: 78