PDB: 1ida Compound: Human immunodeficiency virus type 2 (hiv-2) protea Classification: HYDROLASE(ACID PROTEINASE) Entry date in PDB: 1995-01-26 Resolution [Å]: 1.70 R-Factor: 0.196

CHAIN: A SWISS-PROT/TREMBL: P04584    KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger    EC: 2.7.7.49 SCOP: b.50.1.1 All beta proteins    Acid proteases    Acid proteases    Retroviral protease (retropepsin)    Human immunodeficiency virus type 2 (HIV-2) protease    Human immunodeficiency virus type 2 GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication    CHAIN: B SWISS-PROT/TREMBL: P04584    KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger    EC: 2.7.7.49 SCOP: b.50.1.1 All beta proteins    Acid proteases    Acid proteases    Retroviral protease (retropepsin)    Human immunodeficiency virus type 2 (HIV-2) protease    Human immunodeficiency virus type 2 GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication

Image Source: PDB

Loops in ArchDB95 clusters

1ida_A_84 - EH => SUBCLASS : 1.1.7
1ida_A_18 - AR => SUBCLASS : 4.7.1
1ida_A_53 - HA => SUBCLASS : 2.1.3
1ida_A_10 - HA => SUBCLASS : 2.1.4

Loops in ArchDB-EC clusters

1ida_A_10 - HA => SUBCLASS : 2.4.4

Loops not clustered in ArchDB

1ida_A_32 - AR
1ida_A_69 - AR
1ida_A_18 - AR
1ida_A_32 - AR
1ida_A_69 - AR
1ida_A_43 - HA
1ida_A_10 - HA
1ida_A_43 - HA
1ida_A_53 - HA

1az5 - - percentage of sequence identity: 85
1hii A - percentage of sequence identity: 100
1hii B - percentage of sequence identity: 100
1hsh A - percentage of sequence identity: 100
1hsh B - percentage of sequence identity: 100
1hsh C - percentage of sequence identity: 100
1hsh D - percentage of sequence identity: 100
1hsi A - percentage of sequence identity: 100
1hsi B - percentage of sequence identity: 100
1ida A - percentage of sequence identity: 100
1ida B - percentage of sequence identity: 100
1idb A - percentage of sequence identity: 100
1idb B - percentage of sequence identity: 100
1ivp A - percentage of sequence identity: 98
1ivp B - percentage of sequence identity: 98
1ivq A - percentage of sequence identity: 98
1ivq B - percentage of sequence identity: 98
1jld A - percentage of sequence identity: 100
1jld B - percentage of sequence identity: 100
1sip - - percentage of sequence identity: 87
1siv A - percentage of sequence identity: 86
1siv B - percentage of sequence identity: 86
1tcw A - percentage of sequence identity: 86
1tcw B - percentage of sequence identity: 86
1yti A - percentage of sequence identity: 85
1ytj A - percentage of sequence identity: 85
2hpe A - percentage of sequence identity: 98
2hpe B - percentage of sequence identity: 98
2hpf A - percentage of sequence identity: 98
2hpf B - percentage of sequence identity: 98
2mip A - percentage of sequence identity: 100
2mip B - percentage of sequence identity: 100
2mip C - percentage of sequence identity: 100
2mip D - percentage of sequence identity: 100
2sam - - percentage of sequence identity: 86
3upj A - percentage of sequence identity: 98
3upj B - percentage of sequence identity: 98
4upj A - percentage of sequence identity: 98
4upj B - percentage of sequence identity: 98
5upj A - percentage of sequence identity: 98
5upj B - percentage of sequence identity: 98
6upj A - percentage of sequence identity: 98
6upj B - percentage of sequence identity: 98