PDB: 1iow Compound: d-ala Classification: LIGASE Entry date in PDB: 1997-02-12 Resolution [Å]: 1.90 R-Factor: 0.158

CHAIN: - SWISS-PROT/TREMBL: P07862    KEYWORD: 3D-structure    Cell wall    Complete proteome    Ligase    Peptidoglycan synthesis    EC: 6.3.2.4 SCOP: c.30.1.2 Alpha and beta proteins (a/b)    PreATP-grasp domain    PreATP-grasp domain    D-Alanine ligase N-terminal domain    D-Ala-D-Ala ligase, N-domain    Escherichia coli, gene ddlB SCOP: d.142.1.1 Alpha and beta proteins (a+b)    ATP-grasp    Glutathione synthetase ATP-binding domain-like    ATP-binding domain of peptide synthetases    D-ala-D-ala ligase, C-domain    Escherichia coli, gene ddlB GO:  cell wall    cytoplasm    catalytic activity    D-alanine-D-alanine ligase activity    peptidoglycan biosynthesis

Image Source: PDB

Loops in ArchDB40 clusters

1iow_*_187 - HA => SUBCLASS : 2.3.1
1iow_*_253 - HA => SUBCLASS : 3.1.1
1iow_*_88 - HH => SUBCLASS : 1.2.1
1iow_*_88 - HH => SUBCLASS : 1.2.2
1iow_*_282 - HH => SUBCLASS : 3.1.1

Loops in ArchDB95 clusters

1iow_*_155 - EH => SUBCLASS : 2.12.1
1iow_*_88 - HH => SUBCLASS : 1.1.1
1iow_*_282 - HH => SUBCLASS : 3.1.1
1iow_*_16 - HE => SUBCLASS : 1.1.1
1iow_*_163 - HE => SUBCLASS : 2.3.3
1iow_*_97 - HE => SUBCLASS : 6.14.1
1iow_*_187 - HA => SUBCLASS : 2.3.1
1iow_*_253 - HA => SUBCLASS : 3.1.1

Loops in ArchDB-EC clusters

1iow_*_282 - HH => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1iow_*_176 - AR
1iow_*_196 - AR
1iow_*_36 - AR
1iow_*_36 - AR
1iow_*_176 - AR
1iow_*_196 - AR
1iow_*_4 - EH
1iow_*_266 - EH
1iow_*_222 - EH
1iow_*_201 - EH
1iow_*_114 - EH
1iow_*_55 - EH
1iow_*_141 - HA
1iow_*_187 - HA
1iow_*_141 - HA
1iow_*_253 - HA
1iow_*_231 - HE
1iow_*_212 - HE
1iow_*_129 - HE
1iow_*_71 - HH
1iow_*_119 - HH

1iov - - percentage of sequence identity: 99
2dln - - percentage of sequence identity: 99