ArchDB - Biological DataBase of Protein Loops

Information on 1ir1

PDB: 1ir1
Compound: large subunit of rubisco
Classification: LYASE
Entry date in PDB: 2002-03-13
Resolution [Å]: 1.80
R-Factor: 0.155

CHAIN: A

SWISS-PROT/TREMBL: P00875
   KEYWORD: 3D-structure    Acetylation    Carbon dioxide fixation    Chloroplast    Lyase    Magnesium    Metal-binding    Monooxygenase    Oxidoreductase    Photorespiration    Photosynthesis
EC: 4.1.1.39
SCOP: c.1.14.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    RuBisCo, C-terminal domain    RuBisCo, large subunit, C-terminal domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Spinach (Spinacia oleracea)
SCOP: d.58.9.1 Alpha and beta proteins (a+b)    Ferredoxin-like    RuBisCO, large subunit, small (N-terminal) domain    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Ribulose 1,5-bisphosphate carboxylase-oxygenase    Spinach (Spinacia oleracea)
GO:  ribulose bisphosphate carboxylase complex (sensu Magnoliophyta)    ribulose-bisphosphate carboxylase activity    carbon utilization by fixation of carbon dioxide

CHAIN: B

Image Source: PDB

Stored Loops of 1ir1

Loops in ArchDB95 clusters

1ir1_S_98 - HA => SUBCLASS : 4.1.2

Loops not clustered in ArchDB

1ir1_S_68 - EH
1ir1_S_39 - HA
1ir1_S_23 - HE
1ir1_S_80 - HE

Homologous structures to 1ir1 classified in ArchDB

1aa1 C - percentage of sequence identity: 94
1aa1 F - percentage of sequence identity: 94
1aa1 I - percentage of sequence identity: 94
1aa1 S - percentage of sequence identity: 94
1aus S - percentage of sequence identity: 94
1aus T - percentage of sequence identity: 94
1aus U - percentage of sequence identity: 94
1aus V - percentage of sequence identity: 94
1ej7 S - percentage of sequence identity: 74
1ir1 S - percentage of sequence identity: 100
1ir1 T - percentage of sequence identity: 100
1ir1 U - percentage of sequence identity: 100
1ir1 V - percentage of sequence identity: 100
1rbl A - percentage of sequence identity: 82
1rbo C - percentage of sequence identity: 94
1rbo F - percentage of sequence identity: 94
1rbo I - percentage of sequence identity: 94
1rbo S - percentage of sequence identity: 94
1rco C - percentage of sequence identity: 94
1rco F - percentage of sequence identity: 94
1rco I - percentage of sequence identity: 94
1rco M - percentage of sequence identity: 94
1rco P - percentage of sequence identity: 94
1rco S - percentage of sequence identity: 94
1rco T - percentage of sequence identity: 94
1rco W - percentage of sequence identity: 94
1rcx C - percentage of sequence identity: 94
1rcx F - percentage of sequence identity: 94
1rcx I - percentage of sequence identity: 94
1rcx M - percentage of sequence identity: 94
1rcx P - percentage of sequence identity: 94
1rcx S - percentage of sequence identity: 94
1rcx T - percentage of sequence identity: 94
1rcx W - percentage of sequence identity: 94
1rlc S - percentage of sequence identity: 74
1rld S - percentage of sequence identity: 74
1rld T - percentage of sequence identity: 74
1rxo C - percentage of sequence identity: 94
1rxo F - percentage of sequence identity: 94
1rxo I - percentage of sequence identity: 94
1rxo S - percentage of sequence identity: 94
1upm C - percentage of sequence identity: 94
1upm F - percentage of sequence identity: 94
1upm I - percentage of sequence identity: 94
1upm M - percentage of sequence identity: 94
1upm P - percentage of sequence identity: 94
1upm S - percentage of sequence identity: 94
1upm T - percentage of sequence identity: 94
1upm W - percentage of sequence identity: 94
1upp I - percentage of sequence identity: 94
1upp J - percentage of sequence identity: 94
1upp K - percentage of sequence identity: 94
1upp L - percentage of sequence identity: 94
1uzd C - percentage of sequence identity: 64
1uzd F - percentage of sequence identity: 64
1uzd I - percentage of sequence identity: 64
1uzd J - percentage of sequence identity: 64
1uzd M - percentage of sequence identity: 64
1uzd P - percentage of sequence identity: 64
1uzd T - percentage of sequence identity: 64
1uzd W - percentage of sequence identity: 64
1wdd S - percentage of sequence identity: 72
1wdd W - percentage of sequence identity: 72
3rub S - percentage of sequence identity: 74
4rub S - percentage of sequence identity: 73
4rub T - percentage of sequence identity: 73
4rub U - percentage of sequence identity: 73
4rub V - percentage of sequence identity: 73
8ruc A - percentage of sequence identity: 100
8ruc I - percentage of sequence identity: 94
8ruc J - percentage of sequence identity: 94
8ruc K - percentage of sequence identity: 94
8ruc L - percentage of sequence identity: 94