PDB: 1itv Compound: mmp9 Classification: HYDROLASE Entry date in PDB: 2002-09-04 Resolution [Å]: 1.95 R-Factor: 0.229

CHAIN: A SWISS-PROT/TREMBL: P14780    KEYWORD: 3D-structure    Calcium    Collagen degradation    Extracellular matrix    Glycoprotein    Hydrolase    Metalloprotease    Polymorphism    Repeat    Signal    Zinc    Zymogen    EC: 3.4.24.35 SCOP: b.66.1.1 All beta proteins    4-bladed beta-propeller    Hemopexin-like domain    Hemopexin-like domain    Gelatinase B (MMP-9)    Human (Homo sapiens) GO:  extracellular matrix (sensu Metazoa)    metalloendopeptidase activity    metallopeptidase activity    zinc ion binding    proteolysis and peptidolysis    CHAIN: B SWISS-PROT/TREMBL: P14780    KEYWORD: 3D-structure    Calcium    Collagen degradation    Extracellular matrix    Glycoprotein    Hydrolase    Metalloprotease    Polymorphism    Repeat    Signal    Zinc    Zymogen    EC: 3.4.24.35 SCOP: b.66.1.1 All beta proteins    4-bladed beta-propeller    Hemopexin-like domain    Hemopexin-like domain    Gelatinase B (MMP-9)    Human (Homo sapiens) GO:  extracellular matrix (sensu Metazoa)    metalloendopeptidase activity    metallopeptidase activity    zinc ion binding    proteolysis and peptidolysis

Image Source: PDB

Loops in ArchDB40 clusters

1itv_A_151 - HA => SUBCLASS : 2.1.1
1itv_A_67 - HA => SUBCLASS : 2.3.1
1itv_A_158 - HA => SUBCLASS : 2.3.1
1itv_A_74 - HA => SUBCLASS : 2.3.1
1itv_A_111 - HA => SUBCLASS : 2.3.1
1itv_A_57 - HA => SUBCLASS : 4.1.2
1itv_A_119 - HA => SUBCLASS : 4.1.9
1itv_A_57 - HA => SUBCLASS : 6.1.1
1itv_A_166 - HA => SUBCLASS : 6.29.1
1itv_A_129 - AR => SUBCLASS : 4.2.2

Loops in ArchDB95 clusters

1itv_A_129 - AR => SUBCLASS : 3.2.1
1itv_A_151 - HA => SUBCLASS : 2.1.1
1itv_A_67 - HA => SUBCLASS : 2.3.1
1itv_A_158 - HA => SUBCLASS : 2.3.1
1itv_A_74 - HA => SUBCLASS : 2.3.1
1itv_A_111 - HA => SUBCLASS : 2.3.1
1itv_A_57 - HA => SUBCLASS : 4.1.1
1itv_A_119 - HA => SUBCLASS : 4.1.6
1itv_A_166 - HA => SUBCLASS : 6.24.1

Loops in ArchDB-EC clusters

1itv_A_119 - HA => SUBCLASS : 4.1.10

Loops not clustered in ArchDB

1itv_A_82 - AR
1itv_A_129 - AR
1itv_A_82 - AR
1itv_A_39 - EH
1itv_A_136 - EH
1itv_A_74 - HA
1itv_A_103 - HA
1itv_A_111 - HA
1itv_A_119 - HA
1itv_A_151 - HA
1itv_A_158 - HA
1itv_A_67 - HA
1itv_A_57 - HA
1itv_A_26 - HA
1itv_A_11 - HA
1itv_A_18 - HA
1itv_A_26 - HA
1itv_A_103 - HA
1itv_A_11 - HA
1itv_A_18 - HA
1itv_A_166 - HA
1itv_A_138 - HE
1itv_A_44 - HE

1itv A - percentage of sequence identity: 100
1itv B - percentage of sequence identity: 100