PDB: 1j0x Compound: glyceraldehyde-3-phosphate dehydrogenase Classification: OXIDOREDUCTASE Entry date in PDB: 2003-12-09 Resolution [Å]: 2.40 R-Factor: 0.203

CHAIN: O SWISS-PROT/TREMBL: P46406    KEYWORD: Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) GO:  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis    CHAIN: P SWISS-PROT/TREMBL: P46406    KEYWORD: Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) GO:  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis    CHAIN: Q SWISS-PROT/TREMBL: P46406    KEYWORD: Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) GO:  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis    CHAIN: R SWISS-PROT/TREMBL: P46406    KEYWORD: Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Rabbit (Oryctolagus cuniculus) GO:  glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis

Image Source: PDB

Loops in ArchDB95 clusters

1j0x_O_204 - EH => SUBCLASS : 0.1.46
1j0x_O_238 - EH => SUBCLASS : 5.10.1
1j0x_O_26 - EH => SUBCLASS : 6.2.1
1j0x_O_91 - EH => SUBCLASS : 7.10.2
1j0x_O_290 - AR => SUBCLASS : 3.2.3
1j0x_O_102 - HE => SUBCLASS : 3.1.6
1j0x_O_84 - HE => SUBCLASS : 3.3.1
1j0x_O_252 - HE => SUBCLASS : 6.11.1
1j0x_O_210 - HE => SUBCLASS : 7.10.1

Loops in ArchDB-EC clusters

1j0x_O_210 - HE => SUBCLASS : 7.6.1

Loops not clustered in ArchDB

1j0x_O_225 - AR
1j0x_O_290 - AR
1j0x_O_225 - AR
1j0x_O_167 - AR
1j0x_O_167 - AR
1j0x_O_2 - EH
1j0x_O_69 - EH
1j0x_O_143 - EH
1j0x_O_304 - EH
1j0x_O_298 - HA
1j0x_O_271 - HA
1j0x_O_115 - HA
1j0x_O_63 - HA
1j0x_O_57 - HA
1j0x_O_298 - HA
1j0x_O_271 - HA
1j0x_O_115 - HA
1j0x_O_63 - HA
1j0x_O_57 - HA
1j0x_O_10 - HE
1j0x_O_37 - HE
1j0x_O_151 - HE

1crw G - percentage of sequence identity: 75
1crw R - percentage of sequence identity: 75
1dc3 A - percentage of sequence identity: 67
1dc3 B - percentage of sequence identity: 67
1dc4 A - percentage of sequence identity: 67
1dc4 B - percentage of sequence identity: 67
1dc5 A - percentage of sequence identity: 67
1dc5 B - percentage of sequence identity: 67
1dc6 A - percentage of sequence identity: 67
1dc6 B - percentage of sequence identity: 67
1dss G - percentage of sequence identity: 75
1dss R - percentage of sequence identity: 75
1gad O - percentage of sequence identity: 67
1gad P - percentage of sequence identity: 67
1gae O - percentage of sequence identity: 66
1gae P - percentage of sequence identity: 66
1gpd G - percentage of sequence identity: 74
1gpd R - percentage of sequence identity: 74
1ihx A - percentage of sequence identity: 74
1ihx B - percentage of sequence identity: 74
1ihx C - percentage of sequence identity: 74
1ihx D - percentage of sequence identity: 74
1ihy A - percentage of sequence identity: 74
1ihy B - percentage of sequence identity: 74
1ihy C - percentage of sequence identity: 74
1ihy D - percentage of sequence identity: 74
1j0x O - percentage of sequence identity: 100
1j0x P - percentage of sequence identity: 100
1j0x Q - percentage of sequence identity: 100
1j0x R - percentage of sequence identity: 100
1s7c A - percentage of sequence identity: 67
1szj G - percentage of sequence identity: 75
1szj R - percentage of sequence identity: 75
1u8f O - percentage of sequence identity: 95
1u8f P - percentage of sequence identity: 95
1u8f Q - percentage of sequence identity: 95
1u8f R - percentage of sequence identity: 95
1ywg O - percentage of sequence identity: 65
1ywg P - percentage of sequence identity: 65
1ywg Q - percentage of sequence identity: 65
1ywg R - percentage of sequence identity: 65
1znq O - percentage of sequence identity: 95
1znq P - percentage of sequence identity: 95
1znq Q - percentage of sequence identity: 95
1znq R - percentage of sequence identity: 95
2b4r O - percentage of sequence identity: 65
2b4r P - percentage of sequence identity: 65
2b4r Q - percentage of sequence identity: 65
2b4r R - percentage of sequence identity: 65
2b4t O - percentage of sequence identity: 65
2b4t P - percentage of sequence identity: 65
2b4t Q - percentage of sequence identity: 65
2b4t R - percentage of sequence identity: 65
3gpd G - percentage of sequence identity: 90
3gpd R - percentage of sequence identity: 90
4gpd 1 - percentage of sequence identity: 74
4gpd 2 - percentage of sequence identity: 74
4gpd 3 - percentage of sequence identity: 74
4gpd 4 - percentage of sequence identity: 74