PDB: 1j54 Compound: DNA polymerase iii, epsilon chain Classification: TRANSFERASE Entry date in PDB: 2002-10-16 Resolution [Å]: 1.70 R-Factor: 0.201

CHAIN: A SWISS-PROT/TREMBL: P03007    KEYWORD: 3D-structure    Complete proteome    DNA replication    DNA-directed DNA polymerase    Exonuclease    Hydrolase    Transferase    EC: 2.7.7.7 SCOP: c.55.3.5 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    DnaQ-like 3'-5' exonuclease    N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III    Escherichia coli GO:  intracellular    DNA binding    DNA-directed DNA polymerase activity    exonuclease activity    DNA replication

Image Source: PDB

Loops in ArchDB40 clusters

1j54_A_79 - HE => SUBCLASS : 2.7.1
1j54_A_30 - HA => SUBCLASS : 2.4.2
1j54_A_94 - EH => SUBCLASS : 2.6.4
1j54_A_60 - HH => SUBCLASS : 3.1.3
1j54_A_70 - HH => SUBCLASS : 3.7.4

Loops in ArchDB95 clusters

1j54_A_94 - EH => SUBCLASS : 2.6.3
1j54_A_94 - EH => SUBCLASS : 3.11.2
1j54_A_60 - HH => SUBCLASS : 3.4.2
1j54_A_60 - HH => SUBCLASS : 3.4.8
1j54_A_70 - HH => SUBCLASS : 3.8.5
1j54_A_145 - HH => SUBCLASS : 9.8.1
1j54_A_79 - HE => SUBCLASS : 2.12.1
1j54_A_79 - HE => SUBCLASS : 3.8.1
1j54_A_79 - HE => SUBCLASS : 3.8.2
1j54_A_30 - HA => SUBCLASS : 2.5.1

Loops in ArchDB-EC clusters

1j54_A_60 - HH => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1j54_A_42 - AR
1j54_A_42 - AR
1j54_A_48 - EH
1j54_A_126 - EH
1j54_A_8 - HA
1j54_A_8 - HA
1j54_A_30 - HA
1j54_A_100 - HE
1j54_A_130 - HH

1j53 A - percentage of sequence identity: 100