PDB: 1ji1 Compound: alpha-amylase i Classification: HYDROLASE Entry date in PDB: 2002-06-05 Resolution [Å]: 1.60 R-Factor: 0.182

CHAIN: A SWISS-PROT/TREMBL: Q60053    KEYWORD: 3D-structure    Calcium-binding    Carbohydrate metabolism    Chloride    Glycosidase    Hydrolase    Signal    EC: 3.2.1.135 SCOP: b.1.18.2 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    E-set domains of sugar-utilizing enzymes    Maltogenic amylase, N-terminal domain N    Thermoactinomyces vulgaris, TVAI SCOP: b.71.1.1 All beta proteins    Glycosyl hydrolase domain    Glycosyl hydrolase domain    alpha-Amylases, C-terminal beta-sheet domain    Maltogenic amylase    Thermoactinomyces vulgaris, TVAI SCOP: c.1.8.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    (Trans)glycosidases    Amylase, catalytic domain    Maltogenic amylase, central domain    Thermoactinomyces vulgaris, TVAI GO:  alpha-amylase activity    hydrolase activity, hydrolyzing O-glycosyl compounds    carbohydrate metabolism    CHAIN: B SWISS-PROT/TREMBL: Q60053    KEYWORD: 3D-structure    Calcium-binding    Carbohydrate metabolism    Chloride    Glycosidase    Hydrolase    Signal    EC: 3.2.1.135 SCOP: b.1.18.2 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    E-set domains of sugar-utilizing enzymes    Maltogenic amylase, N-terminal domain N    Thermoactinomyces vulgaris, TVAI SCOP: b.71.1.1 All beta proteins    Glycosyl hydrolase domain    Glycosyl hydrolase domain    alpha-Amylases, C-terminal beta-sheet domain    Maltogenic amylase    Thermoactinomyces vulgaris, TVAI SCOP: c.1.8.1 Alpha and beta proteins (a/b)    TIM beta/alpha-barrel    (Trans)glycosidases    Amylase, catalytic domain    Maltogenic amylase, central domain    Thermoactinomyces vulgaris, TVAI GO:  alpha-amylase activity    hydrolase activity, hydrolyzing O-glycosyl compounds    carbohydrate metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1ji1_A_458 - HE => SUBCLASS : 1.2.7
1ji1_A_128 - HE => SUBCLASS : 2.6.1
1ji1_A_484 - HE => SUBCLASS : 3.21.1
1ji1_A_371 - HE => SUBCLASS : 4.1.1
1ji1_A_158 - HA => SUBCLASS : 2.1.1
1ji1_A_567 - HA => SUBCLASS : 2.2.1
1ji1_A_99 - HA => SUBCLASS : 2.2.2
1ji1_A_88 - HA => SUBCLASS : 2.3.1
1ji1_A_309 - HA => SUBCLASS : 2.4.8
1ji1_A_300 - HA => SUBCLASS : 3.28.1
1ji1_A_45 - HA => SUBCLASS : 4.1.1
1ji1_A_606 - HA => SUBCLASS : 4.1.2
1ji1_A_555 - HA => SUBCLASS : 4.1.5
1ji1_A_555 - HA => SUBCLASS : 4.1.7
1ji1_A_64 - HA => SUBCLASS : 5.2.1
1ji1_A_215 - HA => SUBCLASS : 9.7.1
1ji1_A_227 - EH => SUBCLASS : 6.5.1
1ji1_A_623 - AR => SUBCLASS : 3.5.2
1ji1_A_578 - AR => SUBCLASS : 3.8.1
1ji1_A_615 - AR => SUBCLASS : 4.32.1
1ji1_A_578 - AR => SUBCLASS : 5.1.1
1ji1_A_32 - AR => SUBCLASS : 5.41.1
1ji1_A_533 - HH => SUBCLASS : 1.2.2
1ji1_A_533 - HH => SUBCLASS : 1.2.9
1ji1_A_442 - HH => SUBCLASS : 2.1.8
1ji1_A_476 - HH => SUBCLASS : 3.8.1

Loops in ArchDB95 clusters

1ji1_A_227 - EH => SUBCLASS : 6.19.1
1ji1_A_623 - AR => SUBCLASS : 1.1.2
1ji1_A_578 - AR => SUBCLASS : 5.1.1
1ji1_A_578 - AR => SUBCLASS : 5.1.2
1ji1_A_32 - AR => SUBCLASS : 5.76.1
1ji1_A_533 - HH => SUBCLASS : 1.1.1
1ji1_A_442 - HH => SUBCLASS : 2.3.2
1ji1_A_476 - HH => SUBCLASS : 3.7.2
1ji1_A_549 - HE => SUBCLASS : 0.1.4
1ji1_A_128 - HE => SUBCLASS : 0.1.5
1ji1_A_458 - HE => SUBCLASS : 1.3.11
1ji1_A_484 - HE => SUBCLASS : 3.19.1
1ji1_A_371 - HE => SUBCLASS : 4.1.1
1ji1_A_158 - HA => SUBCLASS : 2.1.1
1ji1_A_309 - HA => SUBCLASS : 2.1.8
1ji1_A_567 - HA => SUBCLASS : 2.2.1
1ji1_A_99 - HA => SUBCLASS : 2.2.2
1ji1_A_88 - HA => SUBCLASS : 2.3.1
1ji1_A_45 - HA => SUBCLASS : 4.1.1
1ji1_A_606 - HA => SUBCLASS : 4.1.2
1ji1_A_555 - HA => SUBCLASS : 4.1.8
1ji1_A_64 - HA => SUBCLASS : 5.2.1
1ji1_A_215 - HA => SUBCLASS : 9.17.1

Loops in ArchDB-EC clusters

1ji1_A_476 - HH => SUBCLASS : 3.5.1

Loops not clustered in ArchDB

1ji1_A_615 - AR
1ji1_A_57 - AR
1ji1_A_74 - AR
1ji1_A_107 - AR
1ji1_A_135 - AR
1ji1_A_162 - AR
1ji1_A_32 - AR
1ji1_A_208 - AR
1ji1_A_258 - AR
1ji1_A_306 - AR
1ji1_A_57 - AR
1ji1_A_74 - AR
1ji1_A_590 - AR
1ji1_A_578 - AR
1ji1_A_306 - AR
1ji1_A_258 - AR
1ji1_A_623 - AR
1ji1_A_107 - AR
1ji1_A_208 - AR
1ji1_A_162 - AR
1ji1_A_135 - AR
1ji1_A_590 - AR
1ji1_A_500 - EH
1ji1_A_465 - EH
1ji1_A_118 - EH
1ji1_A_413 - EH
1ji1_A_184 - EH
1ji1_A_313 - EH
1ji1_A_352 - EH
1ji1_A_300 - HA
1ji1_A_309 - HA
1ji1_A_392 - HA
1ji1_A_555 - HA
1ji1_A_567 - HA
1ji1_A_606 - HA
1ji1_A_392 - HA
1ji1_A_215 - HA
1ji1_A_165 - HA
1ji1_A_165 - HA
1ji1_A_64 - HA
1ji1_A_88 - HA
1ji1_A_99 - HA
1ji1_A_45 - HA
1ji1_A_158 - HA
1ji1_A_339 - HE
1ji1_A_238 - HE
1ji1_A_197 - HE
1ji1_A_190 - HH
1ji1_A_327 - HH
1ji1_A_421 - HH

1izj A - percentage of sequence identity: 99
1izk A - percentage of sequence identity: 99
1ji1 A - percentage of sequence identity: 100
1ji1 B - percentage of sequence identity: 100
1uh2 A - percentage of sequence identity: 99
1uh3 A - percentage of sequence identity: 100
1uh4 A - percentage of sequence identity: 99