PDB: 1jla Compound: hiv-1 rt a-chain Classification: TRANSFERASE Entry date in PDB: 2001-10-03 Resolution [Å]: 2.50 R-Factor: 0.203

CHAIN: A SWISS-PROT/TREMBL: P04585    KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger    EC: 2.7.7.49 SCOP: c.55.3.1 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    Ribonuclease H    HIV RNase H (Domain of reverse transcriptase)    Human immunodeficiency virus type 1 SCOP: e.8.1.2 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    Reverse transcriptase    HIV-1 reverse transcriptase    Human immunodeficiency virus type 1 GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication    CHAIN: B SWISS-PROT/TREMBL: P04585    KEYWORD: 3D-structure    AIDS    Aspartyl protease    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger    EC: 2.7.7.49 SCOP: e.8.1.2 Multi-domain proteins (alpha and beta)    DNA/RNA polymerases    DNA/RNA polymerases    Reverse transcriptase    HIV-1 reverse transcriptase    Human immunodeficiency virus type 1 GO:  aspartic-type endopeptidase activity    DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    proteolysis and peptidolysis    RNA-dependent DNA replication

Image Source: PDB

Loops in ArchDB95 clusters

1jla_A_464 - EH => SUBCLASS : 3.6.1
1jla_A_388 - EH => SUBCLASS : 3.7.4
1jla_A_315 - AR => SUBCLASS : 7.36.1
1jla_A_28 - HE => SUBCLASS : 2.4.1
1jla_A_500 - HE => SUBCLASS : 3.3.2
1jla_A_438 - HA => SUBCLASS : 4.1.6

Loops not clustered in ArchDB

1jla_A_47 - AR
1jla_A_414 - AR
1jla_A_105 - AR
1jla_A_347 - AR
1jla_A_239 - AR
1jla_A_186 - EH
1jla_A_252 - EH
1jla_A_292 - EH
1jla_A_361 - EH
1jla_A_492 - EH
1jla_A_512 - EH
1jla_A_530 - EH
1jla_A_142 - EH
1jla_A_72 - EH
1jla_A_453 - HA
1jla_A_60 - HA
1jla_A_130 - HA
1jla_A_179 - HA
1jla_A_227 - HA
1jla_A_232 - HA
1jla_A_326 - HA
1jla_A_336 - HA
1jla_A_474 - HE
1jla_A_395 - HE
1jla_A_364 - HE
1jla_A_297 - HE
1jla_A_254 - HE
1jla_A_195 - HE
1jla_A_156 - HE
1jla_A_78 - HE
1jla_A_516 - HE

1bqm A - percentage of sequence identity: 98
1bqm B - percentage of sequence identity: 99
1bqn A - percentage of sequence identity: 98
1bqn B - percentage of sequence identity: 98
1c0t A - percentage of sequence identity: 99
1c0t B - percentage of sequence identity: 99
1c0u A - percentage of sequence identity: 99
1c0u B - percentage of sequence identity: 99
1c1b A - percentage of sequence identity: 99
1c1b B - percentage of sequence identity: 99
1c1c A - percentage of sequence identity: 99
1c1c B - percentage of sequence identity: 99
1dlo A - percentage of sequence identity: 98
1dlo B - percentage of sequence identity: 99
1dtq A - percentage of sequence identity: 99
1dtq B - percentage of sequence identity: 99
1dtt A - percentage of sequence identity: 99
1dtt B - percentage of sequence identity: 99
1eet A - percentage of sequence identity: 98
1eet B - percentage of sequence identity: 99
1ep4 A - percentage of sequence identity: 99
1ep4 B - percentage of sequence identity: 99
1fk9 A - percentage of sequence identity: 99
1fk9 B - percentage of sequence identity: 99
1fko A - percentage of sequence identity: 99
1fko B - percentage of sequence identity: 99
1fkp A - percentage of sequence identity: 99
1fkp B - percentage of sequence identity: 99
1har - - percentage of sequence identity: 93
1hmv A - percentage of sequence identity: 98
1hmv B - percentage of sequence identity: 99
1hmv C - percentage of sequence identity: 98
1hmv D - percentage of sequence identity: 99
1hmv E - percentage of sequence identity: 98
1hmv F - percentage of sequence identity: 99
1hmv G - percentage of sequence identity: 98
1hmv H - percentage of sequence identity: 99
1hni A - percentage of sequence identity: 98
1hni B - percentage of sequence identity: 99
1hnv A - percentage of sequence identity: 98
1hnv B - percentage of sequence identity: 99
1hpz A - percentage of sequence identity: 98
1hpz B - percentage of sequence identity: 99
1hqe A - percentage of sequence identity: 98
1hqe B - percentage of sequence identity: 99
1hqu A - percentage of sequence identity: 98
1hqu B - percentage of sequence identity: 99
1hrh B - percentage of sequence identity: 96
1hvu A - percentage of sequence identity: 98
1hvu B - percentage of sequence identity: 99
1hvu D - percentage of sequence identity: 98
1hvu E - percentage of sequence identity: 99
1hvu G - percentage of sequence identity: 98
1hvu H - percentage of sequence identity: 99
1hvu J - percentage of sequence identity: 98
1hvu K - percentage of sequence identity: 99
1hys A - percentage of sequence identity: 98
1hys B - percentage of sequence identity: 99
1ikv A - percentage of sequence identity: 98
1ikv B - percentage of sequence identity: 99
1ikw A - percentage of sequence identity: 98
1ikw B - percentage of sequence identity: 99
1ikx A - percentage of sequence identity: 98
1ikx B - percentage of sequence identity: 99
1iky A - percentage of sequence identity: 98
1iky B - percentage of sequence identity: 99
1j5o A - percentage of sequence identity: 98
1j5o B - percentage of sequence identity: 99
1jkh A - percentage of sequence identity: 100
1jkh B - percentage of sequence identity: 100
1jla A - percentage of sequence identity: 100
1jla B - percentage of sequence identity: 100
1jlb A - percentage of sequence identity: 100
1jlb B - percentage of sequence identity: 100
1jlc A - percentage of sequence identity: 100
1jlc B - percentage of sequence identity: 100
1jle A - percentage of sequence identity: 99
1jle B - percentage of sequence identity: 99
1jlf A - percentage of sequence identity: 99
1jlf B - percentage of sequence identity: 99
1jlg A - percentage of sequence identity: 99
1jlg B - percentage of sequence identity: 99
1jlq A - percentage of sequence identity: 99
1jlq B - percentage of sequence identity: 99
1klm A - percentage of sequence identity: 99
1klm B - percentage of sequence identity: 99
1lw0 A - percentage of sequence identity: 99
1lw0 B - percentage of sequence identity: 99
1lw2 A - percentage of sequence identity: 99
1lw2 B - percentage of sequence identity: 99
1lwc A - percentage of sequence identity: 99
1lwc B - percentage of sequence identity: 99
1lwe A - percentage of sequence identity: 99
1lwe B - percentage of sequence identity: 99
1lwf A - percentage of sequence identity: 98
1lwf B - percentage of sequence identity: 98
1mu2 A - percentage of sequence identity: 60
1mu2 B - percentage of sequence identity: 60
1n5y A - percentage of sequence identity: 98
1n5y B - percentage of sequence identity: 99
1n6q A - percentage of sequence identity: 98
1n6q B - percentage of sequence identity: 99
1o1w A - percentage of sequence identity: 100
1qe1 A - percentage of sequence identity: 98
1qe1 B - percentage of sequence identity: 99
1r0a A - percentage of sequence identity: 98
1r0a B - percentage of sequence identity: 99
1rdh A - percentage of sequence identity: 96
1rdh B - percentage of sequence identity: 96
1rev A - percentage of sequence identity: 99
1rev B - percentage of sequence identity: 99
1rt1 A - percentage of sequence identity: 99
1rt1 B - percentage of sequence identity: 99
1rt2 A - percentage of sequence identity: 99
1rt2 B - percentage of sequence identity: 99
1rt3 A - percentage of sequence identity: 98
1rt3 B - percentage of sequence identity: 99
1rt4 A - percentage of sequence identity: 99
1rt4 B - percentage of sequence identity: 99
1rt5 A - percentage of sequence identity: 99
1rt5 B - percentage of sequence identity: 99
1rt6 A - percentage of sequence identity: 99
1rt6 B - percentage of sequence identity: 99
1rt7 A - percentage of sequence identity: 99
1rt7 B - percentage of sequence identity: 99
1rtd A - percentage of sequence identity: 98
1rtd B - percentage of sequence identity: 99
1rtd C - percentage of sequence identity: 98
1rtd D - percentage of sequence identity: 99
1rth A - percentage of sequence identity: 99
1rth B - percentage of sequence identity: 99
1rti A - percentage of sequence identity: 99
1rti B - percentage of sequence identity: 99
1rtj A - percentage of sequence identity: 99
1rtj B - percentage of sequence identity: 99
1s1t A - percentage of sequence identity: 99
1s1t B - percentage of sequence identity: 99
1s1u A - percentage of sequence identity: 99
1s1u B - percentage of sequence identity: 99
1s1v A - percentage of sequence identity: 99
1s1v B - percentage of sequence identity: 99
1s1w A - percentage of sequence identity: 99
1s1w B - percentage of sequence identity: 99
1s1x A - percentage of sequence identity: 99
1s1x B - percentage of sequence identity: 99
1s6p A - percentage of sequence identity: 98
1s6p B - percentage of sequence identity: 99
1s6q A - percentage of sequence identity: 98
1s6q B - percentage of sequence identity: 99
1s9e A - percentage of sequence identity: 98
1s9e B - percentage of sequence identity: 99
1s9g A - percentage of sequence identity: 98
1s9g B - percentage of sequence identity: 99
1suq A - percentage of sequence identity: 98
1suq B - percentage of sequence identity: 99
1sv5 A - percentage of sequence identity: 98
1sv5 B - percentage of sequence identity: 99
1t03 A - percentage of sequence identity: 98
1t03 B - percentage of sequence identity: 99
1t05 A - percentage of sequence identity: 98
1t05 B - percentage of sequence identity: 99
1tkt A - percentage of sequence identity: 99
1tkt B - percentage of sequence identity: 99
1tkx A - percentage of sequence identity: 99
1tkx B - percentage of sequence identity: 99
1tkz A - percentage of sequence identity: 99
1tkz B - percentage of sequence identity: 99
1tl1 A - percentage of sequence identity: 99
1tl1 B - percentage of sequence identity: 99
1tl3 A - percentage of sequence identity: 99
1tl3 B - percentage of sequence identity: 99
1tv6 A - percentage of sequence identity: 98
1tv6 B - percentage of sequence identity: 99
1tvr A - percentage of sequence identity: 98
1tvr B - percentage of sequence identity: 99
1uwb A - percentage of sequence identity: 98
1uwb B - percentage of sequence identity: 99
1vrt A - percentage of sequence identity: 99
1vrt B - percentage of sequence identity: 99
1vru A - percentage of sequence identity: 99
1vru B - percentage of sequence identity: 99
2b5j A - percentage of sequence identity: 98
2b5j B - percentage of sequence identity: 99
2b6a A - percentage of sequence identity: 98
2b6a B - percentage of sequence identity: 99
2ban A - percentage of sequence identity: 98
2ban B - percentage of sequence identity: 99
2be2 A - percentage of sequence identity: 98
2be2 B - percentage of sequence identity: 99
2hmi A - percentage of sequence identity: 98
2hmi B - percentage of sequence identity: 99
3hvt A - percentage of sequence identity: 98
3hvt B - percentage of sequence identity: 99