PDB: 1jn3 Compound: DNA polymerase beta Classification: TRANSFERASE Entry date in PDB: 2001-08-03 Resolution [Å]: 2.35 R-Factor: 0.215

CHAIN: A SWISS-PROT/TREMBL: P06766    KEYWORD: 3D-structure    DNA replication    DNA-directed DNA polymerase    Magnesium    Metal-binding    Nuclear protein    Transferase    EC: 2.7.7.7 SCOP: a.60.12.1 All alpha proteins    SAM domain-like    DNA polymerase beta-like, second domain    DNA polymerase beta-like, second domain    DNA polymerase beta    Rat (Rattus norvegicus) SCOP: d.218.1.2 Alpha and beta proteins (a+b)    Nucleotidyltransferase    Nucleotidyltransferase    DNA polymerase beta-like    DNA polymerase beta, catalytic (31 kD) fragment    Rat (Rattus norvegicus) GO:  intracellular    beta DNA polymerase activity    DNA binding    DNA-directed DNA polymerase activity    DNA repair    DNA replication

Image Source: PDB

Loops in ArchDB40 clusters

1jn3_A_208 - HE => SUBCLASS : 2.4.1
1jn3_A_152 - HE => SUBCLASS : 4.1.1
1jn3_A_187 - AR => SUBCLASS : 1.1.6
1jn3_A_187 - AR => SUBCLASS : 1.1.11
1jn3_A_92 - HH => SUBCLASS : 5.16.1

Loops in ArchDB95 clusters

1jn3_A_187 - AR => SUBCLASS : 1.2.22
1jn3_A_187 - AR => SUBCLASS : 3.1.5
1jn3_A_92 - HH => SUBCLASS : 5.23.1
1jn3_A_208 - HE => SUBCLASS : 2.4.4
1jn3_A_152 - HE => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1jn3_A_298 - EH
1jn3_A_253 - EH
1jn3_A_150 - EH
1jn3_A_174 - EH
1jn3_A_191 - EH
1jn3_A_224 - HA
1jn3_A_291 - HA
1jn3_A_234 - HA
1jn3_A_134 - HE
1jn3_A_179 - HE
1jn3_A_276 - HE
1jn3_A_108 - HH
1jn3_A_122 - HH
1jn3_A_265 - HH

1bpb - - percentage of sequence identity: 99
1bpd - - percentage of sequence identity: 99
1bpe - - percentage of sequence identity: 99
1bpx A - percentage of sequence identity: 94
1bpz A - percentage of sequence identity: 94
1huo A - percentage of sequence identity: 99
1huo B - percentage of sequence identity: 99
1huz A - percentage of sequence identity: 99
1huz B - percentage of sequence identity: 99
1mq2 A - percentage of sequence identity: 94
1mq3 A - percentage of sequence identity: 94
1nom - - percentage of sequence identity: 99
1rpl - - percentage of sequence identity: 99
1tv9 A - percentage of sequence identity: 94
1tva A - percentage of sequence identity: 94
1zjm A - percentage of sequence identity: 94
1zjn A - percentage of sequence identity: 94
1zqa A - percentage of sequence identity: 94
1zqb A - percentage of sequence identity: 94
1zqc A - percentage of sequence identity: 94
1zqd A - percentage of sequence identity: 94
1zqe A - percentage of sequence identity: 94
1zqf A - percentage of sequence identity: 94
1zqg A - percentage of sequence identity: 94
1zqh A - percentage of sequence identity: 94
1zqi A - percentage of sequence identity: 94
1zqj A - percentage of sequence identity: 94
1zqk A - percentage of sequence identity: 94
1zql A - percentage of sequence identity: 94
1zqm A - percentage of sequence identity: 94
1zqn A - percentage of sequence identity: 94
1zqo A - percentage of sequence identity: 94
1zqp A - percentage of sequence identity: 94
1zqq A - percentage of sequence identity: 94
1zqr A - percentage of sequence identity: 94
1zqs A - percentage of sequence identity: 94
1zqt A - percentage of sequence identity: 94
1zqu - - percentage of sequence identity: 99
1zqv - - percentage of sequence identity: 99
1zqw - - percentage of sequence identity: 99
1zqx - - percentage of sequence identity: 99
1zqy - - percentage of sequence identity: 99
1zqz - - percentage of sequence identity: 99
2bpc - - percentage of sequence identity: 99
2bpf A - percentage of sequence identity: 99
2bpg A - percentage of sequence identity: 99
2bpg B - percentage of sequence identity: 99
7ice A - percentage of sequence identity: 94
7icf A - percentage of sequence identity: 94
7icg A - percentage of sequence identity: 94
7ich A - percentage of sequence identity: 94
7ici A - percentage of sequence identity: 94
7icj A - percentage of sequence identity: 94
7ick A - percentage of sequence identity: 94
7icl A - percentage of sequence identity: 94
7icm A - percentage of sequence identity: 94
7icn A - percentage of sequence identity: 94
7ico A - percentage of sequence identity: 94
7icp A - percentage of sequence identity: 94
7icq A - percentage of sequence identity: 94
7icr A - percentage of sequence identity: 94
7ics A - percentage of sequence identity: 94
7ict A - percentage of sequence identity: 94
7icu A - percentage of sequence identity: 94
7icv A - percentage of sequence identity: 94
8ica A - percentage of sequence identity: 94
8icb A - percentage of sequence identity: 94
8icc A - percentage of sequence identity: 94
8ice A - percentage of sequence identity: 94
8icf A - percentage of sequence identity: 94
8icg A - percentage of sequence identity: 94
8ich A - percentage of sequence identity: 94
8ici A - percentage of sequence identity: 94
8icj A - percentage of sequence identity: 94
8ick A - percentage of sequence identity: 94
8icl A - percentage of sequence identity: 94
8icm A - percentage of sequence identity: 94
8icn A - percentage of sequence identity: 94
8ico A - percentage of sequence identity: 94
8icp A - percentage of sequence identity: 94
8icq A - percentage of sequence identity: 94
8icr A - percentage of sequence identity: 94
8ics A - percentage of sequence identity: 94
8ict A - percentage of sequence identity: 94
8icu A - percentage of sequence identity: 94
8icv A - percentage of sequence identity: 94
8icw A - percentage of sequence identity: 94
8icx A - percentage of sequence identity: 94
8icy A - percentage of sequence identity: 94
8icz A - percentage of sequence identity: 94
9ica A - percentage of sequence identity: 94
9icb A - percentage of sequence identity: 94
9icc A - percentage of sequence identity: 94
9ice A - percentage of sequence identity: 94
9icf A - percentage of sequence identity: 94
9icg A - percentage of sequence identity: 94
9ich A - percentage of sequence identity: 94
9ici A - percentage of sequence identity: 94
9icj A - percentage of sequence identity: 94
9ick A - percentage of sequence identity: 94
9icl A - percentage of sequence identity: 94
9icm A - percentage of sequence identity: 94
9icn A - percentage of sequence identity: 94
9ico A - percentage of sequence identity: 94
9icp A - percentage of sequence identity: 94
9icq A - percentage of sequence identity: 94
9icr A - percentage of sequence identity: 94
9ics A - percentage of sequence identity: 94
9ict A - percentage of sequence identity: 94
9icu A - percentage of sequence identity: 94
9icv A - percentage of sequence identity: 94
9icw A - percentage of sequence identity: 94
9icx A - percentage of sequence identity: 94
9icy A - percentage of sequence identity: 94