PDB: 1k8d Compound: qa-2 antigen Classification: IMMUNE SYSTEM Entry date in PDB: 2001-12-19 Resolution [Å]: 2.30 R-Factor: 0.222

CHAIN: A SWISS-PROT/TREMBL: P14429    KEYWORD: 3D-structure    Glycoprotein    MHC I    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class I MHC, alpha-3 domain    Mouse (Mus musculus) SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class I MHC, alpha-1 and alpha-2 domains    Mouse (Mus musculus), IB QA-2 GO:  MHC class I protein complex    MHC class I receptor activity    antigen presentation    CHAIN: B SWISS-PROT/TREMBL: P01887    KEYWORD: 3D-structure    Immunoglobulin domain    MHC I    Polymorphism    Signal    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    beta2-microglobulin    Mouse (Mus musculus) GO:

Image Source: PDB

Loops in ArchDB95 clusters

1k8d_A_198 - AR => SUBCLASS : 3.16.1
1k8d_A_222 - AR => SUBCLASS : 4.11.3
1k8d_A_241 - AR => SUBCLASS : 6.3.1
1k8d_A_138 - HH => SUBCLASS : 1.3.1
1k8d_A_176 - HE => SUBCLASS : 5.11.1
1k8d_A_56 - HE => SUBCLASS : 6.34.1
1k8d_A_186 - HA => SUBCLASS : 4.2.1
1k8d_A_257 - HA => SUBCLASS : 4.4.1
1k8d_A_94 - HA => SUBCLASS : 5.1.1
1k8d_A_3 - HA => SUBCLASS : 8.9.1

Loops not clustered in ArchDB

1k8d_A_228 - AR
1k8d_A_133 - EH
1k8d_A_46 - EH
1k8d_A_234 - HA
1k8d_A_21 - HA
1k8d_A_214 - HA
1k8d_A_121 - HA
1k8d_A_109 - HA
1k8d_A_31 - HA
1k8d_A_152 - HH
1k8d_A_163 - HH

1a1m A - percentage of sequence identity: 72
1a1o A - percentage of sequence identity: 72
1a9b A - percentage of sequence identity: 72
1a9b D - percentage of sequence identity: 72
1a9e A - percentage of sequence identity: 72
1agb A - percentage of sequence identity: 74
1agc A - percentage of sequence identity: 74
1age A - percentage of sequence identity: 74
1agf A - percentage of sequence identity: 74
1akj A - percentage of sequence identity: 71
1ao7 A - percentage of sequence identity: 71
1b0g A - percentage of sequence identity: 71
1b0g D - percentage of sequence identity: 71
1b0r A - percentage of sequence identity: 71
1bd2 A - percentage of sequence identity: 71
1bii A - percentage of sequence identity: 83
1bmg - - percentage of sequence identity: 67
1bqh A - percentage of sequence identity: 81
1bqh D - percentage of sequence identity: 81
1bz9 A - percentage of sequence identity: 83
1c16 A - percentage of sequence identity: 60
1c16 C - percentage of sequence identity: 60
1c16 E - percentage of sequence identity: 60
1c16 G - percentage of sequence identity: 60
1ce6 A - percentage of sequence identity: 83
1cg9 A - percentage of sequence identity: 72
1ddh A - percentage of sequence identity: 82
1duy A - percentage of sequence identity: 71
1duy D - percentage of sequence identity: 71
1duz A - percentage of sequence identity: 71
1duz D - percentage of sequence identity: 71
1e28 A - percentage of sequence identity: 72
1ed3 A - percentage of sequence identity: 81
1ed3 D - percentage of sequence identity: 81
1eey A - percentage of sequence identity: 71
1eey D - percentage of sequence identity: 71
1eez A - percentage of sequence identity: 71
1eez D - percentage of sequence identity: 71
1efx A - percentage of sequence identity: 72
1ffn A - percentage of sequence identity: 83
1ffn D - percentage of sequence identity: 83
1ffo A - percentage of sequence identity: 83
1ffo D - percentage of sequence identity: 83
1ffp A - percentage of sequence identity: 83
1ffp D - percentage of sequence identity: 83
1fg2 A - percentage of sequence identity: 83
1fg2 D - percentage of sequence identity: 83
1fg2 G - percentage of sequence identity: 83
1fg2 J - percentage of sequence identity: 83
1fo0 H - percentage of sequence identity: 81
1fzj A - percentage of sequence identity: 81
1fzk A - percentage of sequence identity: 81
1fzm A - percentage of sequence identity: 82
1fzo A - percentage of sequence identity: 82
1g6r H - percentage of sequence identity: 81
1g6r I - percentage of sequence identity: 81
1g7p A - percentage of sequence identity: 81
1g7q A - percentage of sequence identity: 81
1hhg A - percentage of sequence identity: 71
1hhg D - percentage of sequence identity: 71
1hhh A - percentage of sequence identity: 71
1hhi A - percentage of sequence identity: 71
1hhi D - percentage of sequence identity: 71
1hhj A - percentage of sequence identity: 71
1hhj D - percentage of sequence identity: 71
1hhk A - percentage of sequence identity: 71
1hhk D - percentage of sequence identity: 71
1hla A - percentage of sequence identity: 70
1hoc A - percentage of sequence identity: 83
1hsa A - percentage of sequence identity: 74
1hsa D - percentage of sequence identity: 74
1i1f A - percentage of sequence identity: 71
1i1f D - percentage of sequence identity: 71
1i1y A - percentage of sequence identity: 71
1i1y D - percentage of sequence identity: 71
1i7r A - percentage of sequence identity: 71
1i7r D - percentage of sequence identity: 71
1i7t A - percentage of sequence identity: 71
1i7t D - percentage of sequence identity: 71
1i7u A - percentage of sequence identity: 71
1i7u D - percentage of sequence identity: 71
1im3 A - percentage of sequence identity: 71
1im3 E - percentage of sequence identity: 71
1im3 I - percentage of sequence identity: 71
1im3 M - percentage of sequence identity: 71
1im9 A - percentage of sequence identity: 72
1im9 E - percentage of sequence identity: 72
1inq A - percentage of sequence identity: 83
1jf1 A - percentage of sequence identity: 71
1jgd A - percentage of sequence identity: 74
1jge A - percentage of sequence identity: 74
1jht A - percentage of sequence identity: 71
1jpf A - percentage of sequence identity: 83
1jpg A - percentage of sequence identity: 83
1kbg H - percentage of sequence identity: 81
1kj2 H - percentage of sequence identity: 81
1kj2 I - percentage of sequence identity: 81
1kj3 H - percentage of sequence identity: 81
1kj3 I - percentage of sequence identity: 81
1kjm A - percentage of sequence identity: 81
1kpr A - percentage of sequence identity: 71
1kpr C - percentage of sequence identity: 71
1kpu A - percentage of sequence identity: 81
1kpv A - percentage of sequence identity: 81
1ktl A - percentage of sequence identity: 71
1ktl C - percentage of sequence identity: 71
1ld9 D - percentage of sequence identity: 83
1ldp H - percentage of sequence identity: 83
1leg A - percentage of sequence identity: 81
1lek A - percentage of sequence identity: 81
1lp9 A - percentage of sequence identity: 71
1lp9 H - percentage of sequence identity: 71
1m05 A - percentage of sequence identity: 74
1m05 C - percentage of sequence identity: 74
1mhc D - percentage of sequence identity: 67
1mhe A - percentage of sequence identity: 71
1mhe C - percentage of sequence identity: 71
1mi5 A - percentage of sequence identity: 74
1mwa H - percentage of sequence identity: 81
1mwa I - percentage of sequence identity: 81
1n2r A - percentage of sequence identity: 74
1n3n A - percentage of sequence identity: 83
1n3n C - percentage of sequence identity: 83
1n3n E - percentage of sequence identity: 83
1n3n G - percentage of sequence identity: 83
1n59 A - percentage of sequence identity: 81
1n59 C - percentage of sequence identity: 81
1n5a A - percentage of sequence identity: 83
1n5a D - percentage of sequence identity: 83
1n5a G - percentage of sequence identity: 83
1n5a J - percentage of sequence identity: 83
1nam H - percentage of sequence identity: 81
1nan H - percentage of sequence identity: 81
1nan L - percentage of sequence identity: 81
1nez A - percentage of sequence identity: 68
1of2 A - percentage of sequence identity: 74
1oga A - percentage of sequence identity: 71
1ogt A - percentage of sequence identity: 74
1osz A - percentage of sequence identity: 81
1p1z A - percentage of sequence identity: 81
1p4l A - percentage of sequence identity: 81
1p7q A - percentage of sequence identity: 71
1q94 A - percentage of sequence identity: 72
1q94 D - percentage of sequence identity: 72
1qew A - percentage of sequence identity: 71
1qlf A - percentage of sequence identity: 83
1qo3 A - percentage of sequence identity: 83
1qqd A - percentage of sequence identity: 73
1qr1 A - percentage of sequence identity: 71
1qr1 D - percentage of sequence identity: 71
1qrn A - percentage of sequence identity: 71
1qse A - percentage of sequence identity: 71
1qsf A - percentage of sequence identity: 71
1qvo A - percentage of sequence identity: 72
1qvo D - percentage of sequence identity: 72
1rjy A - percentage of sequence identity: 82
1rjy D - percentage of sequence identity: 82
1rjz A - percentage of sequence identity: 82
1rjz D - percentage of sequence identity: 82
1rk0 A - percentage of sequence identity: 81
1rk1 A - percentage of sequence identity: 81
1s7q A - percentage of sequence identity: 81
1s7r A - percentage of sequence identity: 81
1s7r D - percentage of sequence identity: 81
1s7s A - percentage of sequence identity: 81
1s7t A - percentage of sequence identity: 81
1s7t D - percentage of sequence identity: 81
1s7u A - percentage of sequence identity: 83
1s7u D - percentage of sequence identity: 83
1s7u G - percentage of sequence identity: 83
1s7u J - percentage of sequence identity: 83
1s7v A - percentage of sequence identity: 83
1s7v D - percentage of sequence identity: 83
1s7w A - percentage of sequence identity: 83
1s7w D - percentage of sequence identity: 83
1s7w G - percentage of sequence identity: 83
1s7w J - percentage of sequence identity: 83
1s7x A - percentage of sequence identity: 83
1s7x D - percentage of sequence identity: 83
1s7x G - percentage of sequence identity: 83
1s7x J - percentage of sequence identity: 83
1s8d A - percentage of sequence identity: 71
1s9w A - percentage of sequence identity: 71
1s9x A - percentage of sequence identity: 71
1s9y A - percentage of sequence identity: 71
1sys A - percentage of sequence identity: 74
1syv A - percentage of sequence identity: 74
1t0m A - percentage of sequence identity: 81
1t0m D - percentage of sequence identity: 81
1t0n A - percentage of sequence identity: 82
1t0n D - percentage of sequence identity: 82
1t1w A - percentage of sequence identity: 71
1t1x A - percentage of sequence identity: 71
1t1y A - percentage of sequence identity: 71
1t1z A - percentage of sequence identity: 71
1t20 A - percentage of sequence identity: 71
1t21 A - percentage of sequence identity: 71
1t22 A - percentage of sequence identity: 71
1tmc A - percentage of sequence identity: 68
1tvb A - percentage of sequence identity: 71
1tvb D - percentage of sequence identity: 71
1tvh A - percentage of sequence identity: 71
1tvh D - percentage of sequence identity: 71
1uxs A - percentage of sequence identity: 74
1uxw A - percentage of sequence identity: 74
1vac A - percentage of sequence identity: 81
1vad A - percentage of sequence identity: 81
1vgk A - percentage of sequence identity: 83
1w0v A - percentage of sequence identity: 74
1w0w A - percentage of sequence identity: 74
1w72 A - percentage of sequence identity: 71
1w72 D - percentage of sequence identity: 71
1wbx A - percentage of sequence identity: 83
1wby A - percentage of sequence identity: 83
1wbz A - percentage of sequence identity: 81
1wbz C - percentage of sequence identity: 81
1x7q A - percentage of sequence identity: 72
1xh3 A - percentage of sequence identity: 72
1xr8 A - percentage of sequence identity: 73
1xr9 A - percentage of sequence identity: 73
1ydp A - percentage of sequence identity: 70
1yn6 A - percentage of sequence identity: 83
1yn7 A - percentage of sequence identity: 83
1ypz A - percentage of sequence identity: 60
1ypz C - percentage of sequence identity: 60
1zhb A - percentage of sequence identity: 83
1zhb D - percentage of sequence identity: 83
1zhb G - percentage of sequence identity: 83
1zhb J - percentage of sequence identity: 83
1zhk A - percentage of sequence identity: 72
1zhl A - percentage of sequence identity: 72
1zsd A - percentage of sequence identity: 72
1zt1 A - percentage of sequence identity: 82
1zt7 A - percentage of sequence identity: 82
1zt7 C - percentage of sequence identity: 82
2a83 A - percentage of sequence identity: 74
2ak4 A - percentage of sequence identity: 72
2ak4 F - percentage of sequence identity: 72
2ak4 K - percentage of sequence identity: 72
2ak4 Q - percentage of sequence identity: 72
2av1 A - percentage of sequence identity: 70
2av1 D - percentage of sequence identity: 70
2av7 A - percentage of sequence identity: 71
2av7 D - percentage of sequence identity: 71
2axf A - percentage of sequence identity: 72
2axg A - percentage of sequence identity: 72
2bck A - percentage of sequence identity: 73
2bck D - percentage of sequence identity: 73
2bnq A - percentage of sequence identity: 71
2bnr A - percentage of sequence identity: 71
2bsr A - percentage of sequence identity: 74
2bss A - percentage of sequence identity: 74
2bst A - percentage of sequence identity: 74
2bsu A - percentage of sequence identity: 71
2bsu D - percentage of sequence identity: 71
2bsv A - percentage of sequence identity: 71
2bsv D - percentage of sequence identity: 71
2bvo A - percentage of sequence identity: 71
2bvp A - percentage of sequence identity: 71
2bvq A - percentage of sequence identity: 71
2ckb H - percentage of sequence identity: 81
2ckb I - percentage of sequence identity: 81
2clr A - percentage of sequence identity: 71
2clr D - percentage of sequence identity: 71
2f74 A - percentage of sequence identity: 83
2f74 D - percentage of sequence identity: 83
2fwo A - percentage of sequence identity: 83
2hla A - percentage of sequence identity: 70
2mha A - percentage of sequence identity: 81
2mha C - percentage of sequence identity: 81
2vaa A - percentage of sequence identity: 81
2vab A - percentage of sequence identity: 81
3hla A - percentage of sequence identity: 70