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PDB code:
Information on 1k9m
PDB:
1k9m
Compound:
23s rrna
Classification:
RIBOSOME
Entry date in PDB:
2002-07-19
Resolution [Å]:
3.00
R-Factor:
0.219
CHAIN:
2
SWISS-PROT/TREMBL:
P32410
KEYWORD:
3D-structure Metal-binding Ribosomal protein RNA-binding rRNA-binding Zinc Zinc-finger
SCOP:
g.41.8.2
Small proteins
Rubredoxin-like
Zn-binding ribosomal proteins
Ribosomal protein L37e
Ribosomal protein L37e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
3
SWISS-PROT/TREMBL:
P22452
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding 3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
a.137.1.1
All alpha proteins
Non-globular all-alpha subunits of globular proteins
Ribosomal protein L39e
Ribosomal protein L39e
Ribosomal protein L39e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
4
SWISS-PROT/TREMBL:
P32411
KEYWORD:
3D-structure Metal-binding Ribosomal protein RNA-binding rRNA-binding tRNA-binding Zinc Zinc-finger
SCOP:
g.41.8.3
Small proteins
Rubredoxin-like
Zn-binding ribosomal proteins
Ribosomal protein L44e
Ribosomal protein L44e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
C
SWISS-PROT/TREMBL:
P20276
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
b.34.5.3
All beta proteins
SH3-like barrel
Translation proteins SH3-like domain
C-terminal domain of ribosomal protein L2
C-terminal domain of ribosomal protein L2
Archaeon Haloarcula marismortui
SCOP:
b.40.4.5
All beta proteins
OB-fold
Nucleic acid-binding proteins
Cold shock DNA-binding domain-like
N-terminal domain of ribosomal protein L2
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
D
SWISS-PROT/TREMBL:
P20279
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
b.43.3.2
All beta proteins
Reductase/isomerase/elongation factor common domain
Translation proteins
Ribosomal protein L3
Ribosomal protein L3
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
E
SWISS-PROT/TREMBL:
P12735
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
c.22.1.1
Alpha and beta proteins (a/b)
Ribosomal protein L4
Ribosomal protein L4
Ribosomal protein L4
Ribosomal protein L4
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
F
SWISS-PROT/TREMBL:
P14124
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
d.77.1.1
Alpha and beta proteins (a+b)
Ribosomal protein L5
Ribosomal protein L5
Ribosomal protein L5
Ribosomal protein L5
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
G
SWISS-PROT/TREMBL:
P14135
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
d.141.1.1
Alpha and beta proteins (a+b)
Ribosomal protein L6
Ribosomal protein L6
Ribosomal protein L6
Ribosomal protein L6
Archaeon Haloarcula marismortui
SCOP:
d.141.1.1
Alpha and beta proteins (a+b)
Ribosomal protein L6
Ribosomal protein L6
Ribosomal protein L6
Ribosomal protein L6
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
H
SWISS-PROT/TREMBL:
P12743
KEYWORD:
3D-structure Ribosomal protein
SCOP:
d.79.3.1
Alpha and beta proteins (a+b)
Bacillus chorismate mutase-like
L30e-like
L30e/L7ae ribosomal proteins
Ribosomal protein L7ae
Archaeon Haloarcula marismortui
GO:
intracellular
ribonucleoprotein complex
ribosome
structural constituent of ribosome
protein biosynthesis
ribosome biogenesis and assembly
CHAIN:
I
SWISS-PROT/TREMBL:
P15825
KEYWORD:
3D-structure Ribosomal protein
SCOP:
j.84.1.1
Peptides
Ribosomal protein L10
Ribosomal protein L10
Ribosomal protein L10
Ribosomal protein L10
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome biogenesis and assembly
CHAIN:
K
SWISS-PROT/TREMBL:
P29198
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
c.21.1.1
Alpha and beta proteins (a/b)
Ribosomal protein L13
Ribosomal protein L13
Ribosomal protein L13
Ribosomal protein L13
Archaeon Haloarcula marismortui
GO:
intracellular
large ribosomal subunit
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
L
SWISS-PROT/TREMBL:
P22450
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
b.39.1.1
All beta proteins
Ribosomal protein L14
Ribosomal protein L14
Ribosomal protein L14
Ribosomal protein L14
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
M
SWISS-PROT/TREMBL:
P12737
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
c.12.1.1
Alpha and beta proteins (a/b)
Ribosomal proteins L15p and L18e
Ribosomal proteins L15p and L18e
Ribosomal proteins L15p and L18e
Ribosomal protein L15 (L15p)
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
O
SWISS-PROT/TREMBL:
P14123
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
c.55.4.1
Alpha and beta proteins (a/b)
Ribonuclease H-like motif
Translational machinery components
Ribosomal protein L18 and S11
Ribosomal protein L18 (L18p)
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
P
SWISS-PROT/TREMBL:
P12733
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
c.12.1.1
Alpha and beta proteins (a/b)
Ribosomal proteins L15p and L18e
Ribosomal proteins L15p and L18e
Ribosomal proteins L15p and L18e
Ribosomal protein L18e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
Q
SWISS-PROT/TREMBL:
P14119
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
a.94.1.1
All alpha proteins
Ribosomal protein L19 (L19e)
Ribosomal protein L19 (L19e)
Ribosomal protein L19 (L19e)
Ribosomal protein L19 (L19e)
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
R
SWISS-PROT/TREMBL:
P12734
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
b.34.5.1
All beta proteins
SH3-like barrel
Translation proteins SH3-like domain
Ribosomal proteins L24p and L21e
Ribosomal proteins L21e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
S
SWISS-PROT/TREMBL:
P10970
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
d.55.1.1
Alpha and beta proteins (a+b)
Ribosomal protein L22
Ribosomal protein L22
Ribosomal protein L22
Ribosomal protein L22
Archaeon Haloarcula marismortui
GO:
intracellular
large ribosomal subunit
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
T
SWISS-PROT/TREMBL:
P12732
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
d.12.1.1
Alpha and beta proteins (a+b)
Ribosomal proteins L23 and L15e
Ribosomal proteins L23 and L15e
L23p
Ribosomal protein L23
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
nucleotide binding
RNA binding
structural constituent of ribosome
protein biosynthesis
CHAIN:
U
SWISS-PROT/TREMBL:
P10972
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
b.34.5.1
All beta proteins
SH3-like barrel
Translation proteins SH3-like domain
Ribosomal proteins L24p and L21e
Ribosomal proteins L24 (L24p)
Archaeon Haloarcula marismortui
GO:
intracellular
large ribosomal subunit
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
V
SWISS-PROT/TREMBL:
P14116
KEYWORD:
3D-structure Metal-binding Ribosomal protein RNA-binding rRNA-binding Zinc Zinc-finger
SCOP:
g.39.1.6
Small proteins
Glucocorticoid receptor-like (DNA-binding domain)
Glucocorticoid receptor-like (DNA-binding domain)
Ribosomal protein L24e
Ribosomal protein L24e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
W
SWISS-PROT/TREMBL:
P10971
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
a.2.2.1
All alpha proteins
Long alpha-hairpin
Ribosomal protein L29 (L29p)
Ribosomal protein L29 (L29p)
Ribosomal protein L29 (L29p)
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
X
SWISS-PROT/TREMBL:
P14121
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
d.59.1.1
Alpha and beta proteins (a+b)
Ribosomal protein L30p/L7e
Ribosomal protein L30p/L7e
Ribosomal protein L30p/L7e
Archaeal L30 (L30a)
Archaeon Haloarcula marismortui
GO:
intracellular
large ribosomal subunit
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
Y
SWISS-PROT/TREMBL:
P18138
KEYWORD:
3D-structure Acetylation Ribosomal protein RNA-binding rRNA-binding
SCOP:
d.29.1.1
Alpha and beta proteins (a+b)
Ribosomal protein L31e
Ribosomal protein L31e
Ribosomal protein L31e
Ribosomal protein L31e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
structural constituent of ribosome
protein biosynthesis
CHAIN:
Z
SWISS-PROT/TREMBL:
P12736
KEYWORD:
3D-structure Ribosomal protein RNA-binding rRNA-binding
SCOP:
c.9.2.1
Alpha and beta proteins (a/b)
Barstar-like
Ribosomal protein L32e
Ribosomal protein L32e
Ribosomal protein L32e
Archaeon Haloarcula marismortui
GO:
intracellular
ribosome
DNA binding
structural constituent of ribosome
protein biosynthesis
Image Source:
PDB
Homologous structures to 1k9m classified in ArchDB
1jj2
V - percentage of sequence identity: 100
null
nu - percentage of sequence identity: 0