PDB: 1kbv Compound: major outer membrane protein pan 1 Classification: OXIDOREDUCTASE Entry date in PDB: 2001-12-05 Resolution [Å]: 1.95 R-Factor: 0.195

CHAIN: A SWISS-PROT/TREMBL: Q02219    KEYWORD: 3D-structure    Lipoprotein    Outer membrane    Palmitate    Repeat    Signal    SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism    CHAIN: B SWISS-PROT/TREMBL: Q02219    KEYWORD: 3D-structure    Lipoprotein    Outer membrane    Palmitate    Repeat    Signal    SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism    CHAIN: C SWISS-PROT/TREMBL: Q02219    KEYWORD: 3D-structure    Lipoprotein    Outer membrane    Palmitate    Repeat    Signal    SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism    CHAIN: D SWISS-PROT/TREMBL: Q02219    KEYWORD: 3D-structure    Lipoprotein    Outer membrane    Palmitate    Repeat    Signal    SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism    CHAIN: E SWISS-PROT/TREMBL: Q02219    KEYWORD: 3D-structure    Lipoprotein    Outer membrane    Palmitate    Repeat    Signal    SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism    CHAIN: F SWISS-PROT/TREMBL: Q02219    KEYWORD: 3D-structure    Lipoprotein    Outer membrane    Palmitate    Repeat    Signal    SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA SCOP: b.6.1.3 All beta proteins    Cupredoxin-like    Cupredoxins    Multidomain cupredoxins    Nitrite reductase, NIR    Neisseria gonorrhoeae, AniA GO:  copper ion binding    nitrite reductase (NO-forming) activity    oxidoreductase activity    nitrogen compound metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1kbv_A_140 - HE => SUBCLASS : 2.2.7
1kbv_A_292 - HE => SUBCLASS : 2.2.7
1kbv_A_190 - HE => SUBCLASS : 4.32.1
1kbv_A_184 - EH => SUBCLASS : 3.3.1
1kbv_A_72 - AR => SUBCLASS : 2.2.1
1kbv_A_72 - AR => SUBCLASS : 3.3.3
1kbv_A_263 - AR => SUBCLASS : 3.5.2
1kbv_A_72 - AR => SUBCLASS : 3.6.1
1kbv_A_117 - AR => SUBCLASS : 4.5.2

Loops in ArchDB95 clusters

1kbv_A_184 - EH => SUBCLASS : 3.1.2
1kbv_A_263 - AR => SUBCLASS : 1.1.2
1kbv_A_72 - AR => SUBCLASS : 1.1.2
1kbv_A_117 - AR => SUBCLASS : 4.3.1
1kbv_A_79 - AR => SUBCLASS : 7.22.1
1kbv_A_200 - AR => SUBCLASS : 12.10.1
1kbv_A_140 - HE => SUBCLASS : 2.5.4
1kbv_A_292 - HE => SUBCLASS : 2.5.4
1kbv_A_190 - HE => SUBCLASS : 4.21.1

Loops not clustered in ArchDB

1kbv_A_222 - AR
1kbv_A_56 - AR
1kbv_A_97 - AR
1kbv_A_149 - AR
1kbv_A_165 - AR
1kbv_A_270 - AR
1kbv_A_257 - AR
1kbv_A_237 - AR
1kbv_A_129 - EH
1kbv_A_282 - EH
1kbv_A_248 - HA
1kbv_A_216 - HA
1kbv_A_38 - HA
1kbv_A_16 - HA

1kbv A - percentage of sequence identity: 100
1kbv B - percentage of sequence identity: 100
1kbv C - percentage of sequence identity: 100
1kbv D - percentage of sequence identity: 100
1kbv E - percentage of sequence identity: 100
1kbv F - percentage of sequence identity: 100
1kbw A - percentage of sequence identity: 100
1kbw B - percentage of sequence identity: 100
1kbw C - percentage of sequence identity: 100
1kbw D - percentage of sequence identity: 100
1kbw E - percentage of sequence identity: 100
1kbw F - percentage of sequence identity: 100