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Information on 1kps
PDB: 1kps
Compound: ubiquitin-like protein sumo-1 conjugating enzyme
Classification: LIGASE/PROTEIN TRANSPORT
Entry date in PDB: 2002-02-13
Resolution [Å]: 2.50
R-Factor: 0.223


CHAIN: A
SWISS-PROT/TREMBL: P50550
   KEYWORD: 3D-structure    Ligase    Multigene family    Ubl conjugation pathway   
EC: 6.3.2.19
SCOP: d.20.1.1 Alpha and beta proteins (a+b)    UBC-like    UBC-like    Ubiquitin conjugating enzyme, UBC    Ubiquitin conjugating enzyme, UBC    Human (Homo sapiens), ubc9
GO:  ubiquitin conjugating enzyme activity    protein modification    ubiquitin cycle   


CHAIN: B
SWISS-PROT/TREMBL: P46061
   KEYWORD: 3D-structure    GTPase activation    Leucine-rich repeat    Repeat   
SCOP: a.118.12.1 All alpha proteins    alpha-alpha superhelix    Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain    Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain    Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain    Mouse (Mus musculus)
GO:  


CHAIN: C
SWISS-PROT/TREMBL: P50550
   KEYWORD: 3D-structure    Ligase    Multigene family    Ubl conjugation pathway   
EC: 6.3.2.19
SCOP: d.20.1.1 Alpha and beta proteins (a+b)    UBC-like    UBC-like    Ubiquitin conjugating enzyme, UBC    Ubiquitin conjugating enzyme, UBC    Human (Homo sapiens), ubc9
GO:  ubiquitin conjugating enzyme activity    protein modification    ubiquitin cycle   


CHAIN: D
SWISS-PROT/TREMBL: P46061
   KEYWORD: 3D-structure    GTPase activation    Leucine-rich repeat    Repeat   
SCOP: a.118.12.1 All alpha proteins    alpha-alpha superhelix    Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain    Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain    Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain    Mouse (Mus musculus)
GO:  
1kps Image
Image Source: PDB

Stored Loops of 1kps

Loops in ArchDB40 clusters

1kps_B_486 - HH => SUBCLASS : 5.4.3

Loops in ArchDB95 clusters

1kps_B_445 - HH => SUBCLASS : 1.4.3
1kps_B_445 - HH => SUBCLASS : 1.4.4
1kps_B_486 - HH => SUBCLASS : 5.3.4

Loops not clustered in ArchDB

1kps_B_436 - HH
1kps_B_455 - HH
1kps_B_468 - HH
1kps_B_511 - HH
1kps_B_538 - HH
1kps_B_558 - HH

Homologous structures to 1kps classified in ArchDB

1kps B - percentage of sequence identity: 100
1kps D - percentage of sequence identity: 100
1u9a A - percentage of sequence identity: 99
1z5s C - percentage of sequence identity: 81